Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7D_RS01400 Genome accession   NZ_OZ217345
Coordinates   258692..260656 (+) Length   654 a.a.
NCBI ID   WP_218764460.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 253692..265656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS01375 (SMIF22_02640) - 254469..255860 (+) 1392 WP_218764461.1 Cof-type HAD-IIB family hydrolase -
  ACLV7D_RS01380 (SMIF22_02650) - 255996..256448 (-) 453 WP_000079148.1 universal stress protein -
  ACLV7D_RS01385 (SMIF22_02660) - 256610..256903 (+) 294 WP_000977375.1 hypothetical protein -
  ACLV7D_RS01390 (SMIF22_02670) - 257060..258274 (+) 1215 WP_164226913.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV7D_RS01395 (SMIF22_02680) rpmH 258419..258553 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  ACLV7D_RS01400 (SMIF22_02690) amiA 258692..260656 (+) 1965 WP_218764460.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS01405 - 260679..260870 (-) 192 WP_218764459.1 hypothetical protein -
  ACLV7D_RS01410 - 261303..265133 (+) 3831 Protein_244 YSIRK-type signal peptide-containing protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72776.64 Da        Isoelectric Point: 4.5246

>NTDB_id=1170342 ACLV7D_RS01400 WP_218764460.1 258692..260656(+) (amiA) [Streptococcus mitis isolate S. mitis F22]
MKKSKVMLFGAMALTAGLALAACGSSQSSNAEKTYSYVFTSNPDTLDYITSTRGSTSSITTNLIDGLLENDKYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGETSDFETVGV
KAVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDSSDQDSLARGFLEGNYSDGRIFPTSSVFDQLKKGNEDKVTYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSLAAMQNKDFRQAVNFAFDRHAYAAQTNGEDGADRILRNTLIPSDFVQIGGKNFGDVVNEKIINYGTEWSNINL
NDAQPAFLNAEKAKAAFAKAKETLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGTDNVVIDVIQLSPDEKDQ
ATFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPESGSQLNNIGLTAGKDNEVKEKIGLSAYKKLLDEADSEVENTQA
RYEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYVELQKEPVTAKQYQELYDKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1170342 ACLV7D_RS01400 WP_218764460.1 258692..260656(+) (amiA) [Streptococcus mitis isolate S. mitis F22]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAAGTAATGCTGAGAAAACCTACTCTTATGTATTTACTAGTAATCCTGATACCTTGGACTACATTACGTCAACACGTG
GTTCCACTTCTAGTATCACGACTAACCTGATTGATGGCTTGTTAGAAAATGATAAGTATGGTAATCTCATTCCATCTATG
GCTGAGTCATGGACGGTGTCAAAAGATGGTTTGACCTACACTTATAAAATCCGTCAGGGGGCGAAATGGTACACTTCAGA
GGGCGAAGAGTATGCGGATGTAACGGCTCATGACTTTGTGACAGGTCTCAAGTATGCAGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTTCAAGACTCTATCAAGGGCCTCGCAGACTACGTTGAGGGGGAAACATCTGACTTTGAGACTGTTGGAGTT
AAGGCAGTGGATGACTATACTCTTCAATATACTTTGAATAAGCCGGAATCTTACTGGAATTCTAAGACTACTGGGGGTAT
TTTGAGTCCTGTAAATGAAGCTTTTTTGAAATCTAAGGGAGATGACTTTGGAAGTGTAACACCATCCAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAATTTGATAAAAACCCTAATTATTGGGACAAGGAT
AATGTGAAAATTGAGAAAGTGAAGCTCTCTTTCTTTGACAGTTCTGATCAAGATAGTTTGGCGAGAGGATTTTTGGAAGG
GAACTACTCGGACGGTCGTATCTTCCCGACAAGTTCAGTGTTTGATCAGTTGAAAAAAGGGAATGAGGACAAAGTCACCT
ACACACCACAAAACTCAGTTACTTTCTATTATCTTTTCAACGTGAATCGTCAAAGCTACAAGCAGACCATGAAACAGTCT
GATAAGGAAAAGACAGATTCACTTGCAGCCATGCAAAATAAGGATTTCCGTCAGGCTGTCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACGCTTATCCCAAGTGATTTTGTCC
AAATCGGTGGTAAAAACTTTGGAGATGTTGTCAATGAAAAGATTATTAACTATGGTACAGAGTGGTCGAATATCAATTTG
AATGATGCGCAACCTGCCTTTTTGAATGCTGAAAAAGCCAAGGCAGCATTTGCTAAAGCTAAAGAAACCTTGCAAGCAGA
AGGCGTGACCTTCCCAATTCATTTGGATATGCCGGTTGACCAGACGGCTAAGTTAGATGTGCAACAAGCAAGTTCCTTTA
AGCAGACAGTGGAAGAAACCCTTGGGACGGACAACGTTGTGATTGACGTGATTCAACTTTCTCCAGACGAGAAGGATCAA
GCTACATTCTTTGCAGATACAGCTGAACAAAAGGACTATGACATTGATATTTCAGGTTGGAGCGGAGATTACTCAGATCC
GAAAACTTATCTTGATCTCTTGGATCCAGAGTCAGGTTCACAGCTTAACAATATTGGGTTGACTGCTGGAAAAGATAATG
AAGTAAAAGAAAAAATTGGACTTTCTGCTTATAAGAAGTTACTAGATGAAGCAGATAGCGAAGTTGAAAATACTCAGGCT
CGTTATGAAAAATTTGCTGAAGTCCAAGCTTGGTTGACTGACAGCGCCCTCTTCCTACCAGTTCAAAGTGGCGGAGCCAA
CCCAATCTTCCGTAAGACTGTACCGTTCACAGGAGCTTTCTCTTTCGTTGGTCATAAGGGAGATGCTGATAACTACAAAT
ATGTTGAACTGCAAAAAGAGCCGGTAACTGCTAAACAGTACCAGGAACTCTATGATAAATGGCTAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTGGCTAACCATATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.927

100

0.563
  amiA3 Streptococcus thermophilus LMD-9

54.711

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.407

100

0.547

Multiple sequence alignment