Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ACLV7D_RS01365 Genome accession   NZ_OZ217345
Coordinates   252379..253389 (+) Length   336 a.a.
NCBI ID   WP_050253459.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 247379..258389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS01335 (SMIF22_02560) - 248372..248563 (+) 192 WP_049512643.1 hypothetical protein -
  ACLV7D_RS01340 (SMIF22_02570) - 248560..248754 (+) 195 WP_049512645.1 hypothetical protein -
  ACLV7D_RS01345 (SMIF22_02580) - 248741..249625 (+) 885 WP_218764466.1 ABC transporter ATP-binding protein -
  ACLV7D_RS01350 (SMIF22_02590) - 249627..250364 (+) 738 WP_218764465.1 ABC transporter permease -
  ACLV7D_RS01355 (SMIF22_02600) - 250364..251461 (+) 1098 WP_218764464.1 sensor histidine kinase -
  ACLV7D_RS01360 (SMIF22_02610) - 251462..252061 (+) 600 WP_218764463.1 response regulator transcription factor -
  ACLV7D_RS01365 (SMIF22_02620) ccpA 252379..253389 (+) 1011 WP_050253459.1 catabolite control protein A Regulator
  ACLV7D_RS01370 (SMIF22_02630) - 253441..254403 (-) 963 WP_218764462.1 asparaginase -
  ACLV7D_RS01375 (SMIF22_02640) - 254469..255860 (+) 1392 WP_218764461.1 Cof-type HAD-IIB family hydrolase -
  ACLV7D_RS01380 (SMIF22_02650) - 255996..256448 (-) 453 WP_000079148.1 universal stress protein -
  ACLV7D_RS01385 (SMIF22_02660) - 256610..256903 (+) 294 WP_000977375.1 hypothetical protein -
  ACLV7D_RS01390 (SMIF22_02670) - 257060..258274 (+) 1215 WP_164226913.1 pyridoxal phosphate-dependent aminotransferase -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37064.10 Da        Isoelectric Point: 5.5389

>NTDB_id=1170341 ACLV7D_RS01365 WP_050253459.1 252379..253389(+) (ccpA) [Streptococcus mitis isolate S. mitis F22]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIFMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKEALKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEEFEIITSDDSQIARFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERRSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=1170341 ACLV7D_RS01365 WP_050253459.1 252379..253389(+) (ccpA) [Streptococcus mitis isolate S. mitis F22]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTTTATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACGATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAACGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAGCCTTGAAAAAAGCAGGAATCGCTT
ATAGTGAAGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTGGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGTGTCTTGAACGGTTTGGCTGATAAGGGTGTGTCAGTACC
AGAAGAATTTGAGATTATTACTAGTGATGATTCGCAAATTGCACGCTTTACCCGTCCAAACTTGACAACTATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACTAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTCGCTCAACACGAAAACGGAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

97.917

100

0.979

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment