Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7A_RS08380 Genome accession   NZ_OZ217344
Coordinates   1739359..1741326 (-) Length   655 a.a.
NCBI ID   WP_411864083.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734359..1746326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS08370 (SMIE22_16590) glf 1735890..1736990 (-) 1101 WP_411864081.1 UDP-galactopyranose mutase -
  ACLV7A_RS08375 (SMIE22_16600) amiA3 1737174..1739132 (-) 1959 WP_411864082.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7A_RS08380 (SMIE22_16610) amiA 1739359..1741326 (-) 1968 WP_411864083.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7A_RS08385 (SMIE22_16620) - 1741601..1743211 (-) 1611 WP_411864084.1 glycoside hydrolase family 13 protein -
  ACLV7A_RS08390 (SMIE22_16630) - 1743363..1744847 (+) 1485 WP_411864085.1 DUF1846 domain-containing protein -
  ACLV7A_RS08395 (SMIE22_16640) - 1744942..1745424 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72710.30 Da        Isoelectric Point: 5.0102

>NTDB_id=1170309 ACLV7A_RS08380 WP_411864083.1 1739359..1741326(-) (amiA) [Streptococcus mitis isolate S. mitis E22]
MQSKKWLLGAGVTLSTAILLTACGKSEKNADAPKTFSYVYAVDPSSLDYSLTSKSSTSDVIGNVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKYAADGKSDGLSLVEKSIKGLEAYVSGETNDFSTVG
VKALDDYTVEYTLNNPESFWNSKVTTATMLPVNEEFLNATGKDYGAPTPSSILYNGPYFLKSLISKSVIEYEKNPNYWDK
DNVKIDNVKLTFYDGSDQESLIRSFTQGAYTTARLFPASSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DESQKTSTKEALLNKNFRQALNFAFNRHAYTAQLNGEEGADKIIRNSLVPDNYVQVAGKTFGQLAQDELLKYGEQWKDVT
LTDGKDTIYNPTKAKSAFEKAKSELQAKGVSFPIHLDVPVEQTDVVAVQQTNSLKQSIEETLGTENVIIDVLQMTDNEKE
SITSQAKVPTQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVMAKVGLDEYKKLLDDAASETSNLD
KRYEKYAKAQAWVTDSSLLLPVASSGGSPMVSRTVPFTKAYSQVGIKGDPFIFKGMELQNDIVTTKEYDAAFKKWQKEKL
ESNAQYQKDLEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170309 ACLV7A_RS08380 WP_411864083.1 1739359..1741326(-) (amiA) [Streptococcus mitis isolate S. mitis E22]
ATGCAATCGAAAAAGTGGCTCTTAGGAGCAGGAGTGACCTTGAGCACAGCCATTCTTCTAACAGCTTGTGGGAAAAGTGA
AAAGAATGCAGATGCTCCCAAAACATTCTCTTATGTTTATGCAGTTGATCCATCATCCTTGGATTATAGCCTTACAAGTA
AAAGTTCAACTTCTGACGTAATAGGTAATGTCGTCGACGGTCTTTTAGAGAATGATAAATATGGGAATCTCATTCCTTCT
CTAGCAGAGGATTGGTCAGTTTCTAAAGATGGCTTGACTTATACCTACAAACTACGTAAAGGTGTGAAGTGGTATACTTC
AGAAGGAGAAGAGTATGCGGAAGTTAAAGCTCAGGATTTTGTTACAGGTCTGAAATATGCAGCAGACGGAAAATCCGATG
GTCTTTCTTTGGTTGAGAAATCCATCAAAGGATTGGAGGCTTATGTTAGTGGTGAGACAAACGACTTCTCAACTGTAGGT
GTGAAGGCTCTTGATGATTATACGGTAGAATATACCCTTAATAACCCGGAAAGTTTTTGGAACTCTAAAGTAACCACAGC
AACCATGCTTCCTGTAAATGAAGAATTTTTGAATGCAACAGGCAAGGATTACGGAGCGCCAACTCCATCAAGTATTCTTT
ACAATGGCCCATATTTTTTGAAATCTTTGATTTCTAAATCTGTGATTGAATATGAAAAAAATCCTAACTATTGGGATAAG
GACAATGTCAAAATTGATAATGTTAAATTGACATTCTATGATGGTTCAGATCAAGAATCCTTAATTCGTAGCTTTACACA
AGGTGCCTATACCACTGCACGTCTTTTTCCAGCAAGCTCAAACTTTGAGTCAACTAAGAAAGAGTACGGAGATAAGATTG
TCTATAGTCCACAAGAGGCAACAAGCTACTACCTCACTGTGAATGTAAACCGCCAGTCTTACAATAAAACAGCTAAAACA
GATGAGTCACAAAAAACATCAACAAAAGAAGCTCTTCTCAATAAGAACTTCCGTCAGGCTCTTAATTTTGCATTTAATCG
CCACGCCTATACAGCTCAATTAAACGGTGAAGAGGGTGCGGATAAGATTATTCGTAATAGTCTAGTGCCAGATAATTACG
TTCAAGTAGCTGGGAAGACCTTCGGACAGTTGGCTCAGGATGAACTACTGAAATATGGAGAACAGTGGAAAGATGTGACT
CTCACAGATGGTAAGGATACAATTTACAATCCAACAAAGGCTAAATCTGCATTTGAAAAAGCGAAGTCAGAATTGCAAGC
TAAGGGAGTAAGTTTCCCGATTCATTTGGATGTGCCTGTTGAGCAAACTGATGTAGTTGCGGTTCAACAAACCAATTCGC
TAAAACAATCAATTGAAGAAACGCTTGGAACGGAGAATGTCATTATAGATGTTCTTCAAATGACAGATAATGAGAAGGAA
AGTATTACTTCTCAAGCTAAAGTTCCAACCCAAAAAGATTATGATTTGAACGGAACAGGTTGGGGACCAGATTACCAAGA
TCCAGCAACCTATCTCAATATTTTAGATGCTAAGAAGGGTTCTGCTTTGAAACACCTAGGTATAACAAAGGGCAAGGATC
CTGAAGTCATGGCGAAAGTTGGCTTGGATGAATACAAGAAGCTCTTGGATGATGCGGCTTCTGAGACAAGTAATCTTGAT
AAACGATACGAAAAGTATGCCAAAGCACAGGCTTGGGTTACTGATAGTTCACTTCTGCTTCCAGTTGCTTCTTCAGGGGG
CTCTCCTATGGTTAGTCGTACTGTTCCATTTACAAAAGCTTATTCACAGGTCGGTATTAAGGGGGATCCATTTATTTTTA
AAGGAATGGAACTTCAAAATGATATTGTGACAACTAAAGAGTATGATGCGGCCTTCAAAAAGTGGCAAAAGGAAAAACTG
GAATCGAATGCTCAGTATCAAAAGGATTTAGAAAAACACATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.04

100

0.533
  amiA3 Streptococcus thermophilus LMD-9

52.656

100

0.53
  amiA3 Streptococcus thermophilus LMG 18311

52.2

100

0.525

Multiple sequence alignment