Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7A_RS06290 Genome accession   NZ_OZ217344
Coordinates   1280096..1282063 (-) Length   655 a.a.
NCBI ID   WP_411863889.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1275096..1287063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS06250 (SMIE22_12340) - 1275205..1275702 (-) 498 WP_050242454.1 GAF domain-containing protein -
  ACLV7A_RS06255 (SMIE22_12350) rpsA 1275789..1276991 (-) 1203 WP_001001632.1 30S ribosomal protein S1 -
  ACLV7A_RS06270 (SMIE22_12380) - 1277365..1277595 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  ACLV7A_RS06275 (SMIE22_12390) pcp 1277763..1278407 (-) 645 WP_000699369.1 pyroglutamyl-peptidase I -
  ACLV7A_RS06280 (SMIE22_12400) - 1278422..1279345 (-) 924 WP_000137263.1 DUF979 domain-containing protein -
  ACLV7A_RS06285 (SMIE22_12410) - 1279342..1280031 (-) 690 WP_000454773.1 DUF969 domain-containing protein -
  ACLV7A_RS06290 (SMIE22_12420) amiA3 1280096..1282063 (-) 1968 WP_411863889.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7A_RS06295 (SMIE22_12430) - 1282086..1283108 (-) 1023 WP_333502937.1 branched-chain amino acid aminotransferase -
  ACLV7A_RS06300 (SMIE22_12440) parC 1283243..1285714 (-) 2472 WP_176139798.1 DNA topoisomerase IV subunit A -
  ACLV7A_RS06305 (SMIE22_12450) - 1286190..1286750 (-) 561 WP_176139799.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72750.40 Da        Isoelectric Point: 5.2053

>NTDB_id=1170294 ACLV7A_RS06290 WP_411863889.1 1280096..1282063(-) (amiA3) [Streptococcus mitis isolate S. mitis E22]
MKSKKWLLTAGVVLSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDIIGNVVDGLMENDKYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNAPESFWNSKVTTATMLPVNEEFLKASGKNYGEVSPAGILYNGPYFLKTLTSKSLIEYEKNPNYWDK
ENVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKVAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLEDAVSETTDLE
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYDEALKKWQKEKL
ESNSKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170294 ACLV7A_RS06290 WP_411863889.1 1280096..1282063(-) (amiA3) [Streptococcus mitis isolate S. mitis E22]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTTTTAGCAGCCTGTGGAAAAGCTGA
TAAAGAAGCAGATGCTCCGACAACATTTTCTTATGTCTATGCAGTGGATCCAGCATCCTTGGACTATAGCATAGCAACGC
GTACATCCACAACAGATATTATCGGGAATGTCGTTGATGGTTTGATGGAAAATGATAAATATGGTAATGTTATTCCTTCT
TTGGCTGAGGATTGGTCTGTCTCAAAAGATGGATTGACTTATACCTATAAACTTCGTAAAGGAGTGAAATGGTACACATC
AGAAGGCGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTTGCTGATGGCAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCCATCAAGGGCTTGGACGCCTACATGACTGGTGAAACCAATGATTTCTCTACAGTTGGT
GTTAAAGCTTTGGATGACTACACAGTTGAGTATACATTGAATGCGCCAGAAAGTTTCTGGAATTCAAAAGTTACAACAGC
GACGATGTTACCTGTAAATGAAGAGTTTTTAAAGGCATCTGGAAAGAATTACGGAGAGGTTAGCCCAGCAGGTATTCTCT
ACAATGGCCCTTATTTCTTAAAAACATTGACTTCTAAATCGTTGATTGAATATGAAAAAAATCCAAATTACTGGGATAAA
GAAAATGTTAAAATTGAGAAGATTAAATTGACCTACTACGATGGTTCAGATCAGGAGTCTTTGATCCGTAGCTTCTCCTC
TGGTGCTTATACGACAGCCCGTCTCTTCCCAAGCAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGTGAGGAGCAAAAGACTTCTACAAAAGAAGCGATGCTCAATAAGGATTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
TCATTCGTATGCTGCCCAGCTAAACGGTGAAGATGGTGCGGACAAGATTATTCGTAACAGCCTTGTTCCAGATAACTTTG
TGCAAGCTGGTGGTAAGAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGTTGCTTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACCTTCCCAATTCACTTGGATGTCCCGGTTGAACAAACAGATACTATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATTGATGTACTTCAAATGACAGATAATGAAAAAGAA
ACGATTACATCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
TCCAGCGTCTTACTTGAATATTATGGATCCAAAATCTGGCTCTGCCATGAAACACCTTGGTATTACAAAAGGAAAAGATA
AGGATGTTGTAGCTAAACTTGGTTTGGATCAATATAAGAAATTGTTAGAAGATGCTGTTTCTGAGACCACTGACCTAGAG
AAGAGATATGAAAAATATGCCAAAGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCTTCATCTGGTGG
TTCTCCAGTTGTAAGTAACGTAGTACCATTCTCAAAACCGTACTCACAAGTTGGTATTAAAGGTGACCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATATGACGAAGCTCTTAAAAAATGGCAAAAAGAAAAATTG
GAATCCAATAGCAAATACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.533
  amiA3 Streptococcus thermophilus LMG 18311

52.273

100

0.527
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525

Multiple sequence alignment