Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7A_RS03255 Genome accession   NZ_OZ217344
Coordinates   636668..638626 (+) Length   652 a.a.
NCBI ID   WP_411863578.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 631668..643626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS03230 (SMIE22_06310) - 631804..632316 (+) 513 WP_061764595.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  ACLV7A_RS03235 (SMIE22_06320) - 632300..632950 (+) 651 WP_261028635.1 DUF1803 domain-containing protein -
  ACLV7A_RS03240 (SMIE22_06330) - 633050..633241 (+) 192 WP_024478880.1 CsbD family protein -
  ACLV7A_RS03245 (SMIE22_06340) - 633290..634735 (-) 1446 WP_411863576.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ACLV7A_RS03250 (SMIE22_06350) - 634841..636463 (+) 1623 WP_411863577.1 putative polysaccharide biosynthesis protein -
  ACLV7A_RS03255 (SMIE22_06360) amiA3 636668..638626 (+) 1959 WP_411863578.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7A_RS03260 (SMIE22_06370) - 638942..639397 (+) 456 WP_411863579.1 hypothetical protein -
  ACLV7A_RS03265 (SMIE22_06380) - 639562..640656 (+) 1095 WP_411863580.1 cystathionine gamma-synthase -
  ACLV7A_RS03270 (SMIE22_06390) - 640664..641830 (+) 1167 WP_411863581.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72730.15 Da        Isoelectric Point: 4.8166

>NTDB_id=1170283 ACLV7A_RS03255 WP_411863578.1 636668..638626(+) (amiA3) [Streptococcus mitis isolate S. mitis E22]
MKKSKSKYLTLAGLVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKNSEALYLVQDSVAGLDDYITGKTSDFSTVGV
KALDEQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSYEGIKEKYKDDIVYSMQDATSYFLNFNLDRQSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNPEKAKAKFAEAKKELEAKGVTFPIHLDKNIELTNKAEIQGINSMKQSIESVLGAENVVIDVHLLSTEDYDS
SGYLAQTAAQKDYDLYNGGWSADYLDPSSYLDIFSVKNGGVLQSLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDIAKR
YEKYAEIQAWLVDSSLAIPNVSLGGTPTLRKIVPFSTPYSLAGNKGVESYKYLKLQDKTVTTDEYAKAREKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170283 ACLV7A_RS03255 WP_411863578.1 636668..638626(+) (amiA3) [Streptococcus mitis isolate S. mitis E22]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAGTTTTATTGAGTGCCTGTGGAAA
TTCTAGCACAGCATCAAAAACATACAATTATGTTTACTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACAACAAATGATATTGTGACCAACCTGGTAGATGGTCTTATGGAAAATGACCAATATGGGAACTATGTTCCATCCTTG
GCTGAGGATTGGACTGTTTCTAAGGACGGTTTAACCTATACCTACAAACTTCGTAAGGATGCTAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCTCAGGATTTTGTAACCGGTTTGCAATATGCAGCTGATAAAAATTCAGAAGCCT
TGTATCTAGTGCAGGATTCTGTTGCAGGTTTGGATGACTATATCACTGGGAAAACAAGCGACTTTTCAACTGTCGGAGTC
AAGGCACTTGATGAGCAAACGGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTCAAATTGACCTACTATGATGGTAGTGACCAAGACGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTACGCTCGTCTCTATCCGAATAGTTCAAGTTATGAAGGAATTAAAGAAAAATACAAAGATGATATCGTCT
ATAGCATGCAAGATGCCACTTCTTACTTCTTAAACTTTAATCTGGATAGACAATCTTATAAATTCACTTCCAAGACAAGT
GATGCTGAAAAGAAATCGACTCAAGAAGCGGTTCTTAATAAAAACTTCCGTCAAGCTATTAATTTTGCCTATGATCGGAC
AGCTTACGGGGCTCAATCTCAAGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTCGTAA
GTATCAAGGGAAAAGACTTTGGTGAAGTAGTGGCTTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGAATCAACTTC
GCGGATGCCCAAGATCCATACTACAATCCAGAGAAAGCCAAAGCCAAATTTGCAGAAGCTAAGAAAGAATTAGAAGCTAA
GGGGGTAACATTCCCTATCCACTTAGATAAAAATATAGAGTTGACCAATAAGGCTGAAATTCAAGGAATCAATTCCATGA
AGCAATCAATTGAGTCTGTCTTAGGTGCAGAAAATGTTGTGATTGATGTCCACCTACTTTCTACAGAGGACTATGATAGT
TCAGGTTATCTAGCTCAAACAGCTGCGCAAAAAGACTACGATCTCTACAATGGTGGTTGGAGTGCGGACTATCTTGATCC
ATCTAGCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAGTCTTGGACTCGAGCCAGGTGAAGCCAATG
ACAAGGCCAAGGCTGTTGGATTGGATGTCTACACTCAAATGTTGGAAGAAGCTAATAAGGAACAAGATATTGCAAAACGC
TATGAAAAGTATGCTGAAATCCAAGCTTGGTTAGTAGATAGCTCTCTAGCAATTCCAAATGTTTCACTTGGTGGAACACC
AACATTGAGAAAAATCGTTCCTTTCTCAACACCATATTCATTGGCTGGTAATAAAGGGGTTGAATCCTATAAATACCTCA
AATTACAAGATAAGACAGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCTCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

55.573

100

0.558
  amiA Streptococcus salivarius strain HSISS4

55.505

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.267

100

0.555

Multiple sequence alignment