Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7A_RS01370 Genome accession   NZ_OZ217344
Coordinates   252284..254248 (+) Length   654 a.a.
NCBI ID   WP_411863389.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 247284..259248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS01340 (SMIE22_02570) - 247969..249360 (+) 1392 WP_050243172.1 Cof-type HAD-IIB family hydrolase -
  ACLV7A_RS01345 (SMIE22_02580) - 249357..249515 (+) 159 WP_411863387.1 hypothetical protein -
  ACLV7A_RS01350 (SMIE22_02590) - 249588..250040 (-) 453 WP_031223038.1 universal stress protein -
  ACLV7A_RS01355 (SMIE22_02600) - 250202..250495 (+) 294 WP_000977375.1 hypothetical protein -
  ACLV7A_RS01360 (SMIE22_02610) - 250652..251866 (+) 1215 WP_411863388.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV7A_RS01365 (SMIE22_02620) rpmH 252011..252145 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  ACLV7A_RS01370 (SMIE22_02630) amiA 252284..254248 (+) 1965 WP_411863389.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72681.59 Da        Isoelectric Point: 4.5267

>NTDB_id=1170263 ACLV7A_RS01370 WP_411863389.1 252284..254248(+) (amiA) [Streptococcus mitis isolate S. mitis E22]
MKKSKVMLLGAMALTAGLALAACGSSQSSNAEKTYSYVFTSNPDTLDYITSTRGSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGETSDFETVGV
KAVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSLARGFLEGNYSDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSLAAMRNKDFRQAVNFAFDRHAYAAQTNGEDGADRILRNTLIPSDFVQIGGKNFGDVVNEKIINYGTEWSNINL
NDAQPAFLNAEKAKAAFAKAKETLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGADNVVIDVIQLSPDEKDQ
ATFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPESGSQLNNIGLTAGKDNEVKEKIGLSAYKKLLDEADSEVENTQA
RYEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYVELQKEPVTAKQYQELYDKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1170263 ACLV7A_RS01370 WP_411863389.1 252284..254248(+) (amiA) [Streptococcus mitis isolate S. mitis E22]
ATGAAGAAATCAAAAGTTATGCTTCTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAAGTAATGCTGAGAAAACCTACTCTTATGTATTTACTAGTAATCCTGATACCTTGGACTACATTACGTCAACACGTG
GTTCCACTTCTAGTATCACGACTAACCTGATTGATGGCTTGTTAGAAAATGATCAGTATGGTAATCTCATTCCATCTATG
GCTGAGTCATGGACGGTGTCAAAAGATGGTTTGACCTACACTTATAAGATCCGTCAGGGGGCGAAATGGTACACTTCAGA
GGGCGAAGAGTATGCGGATGTAACGGCTCATGACTTTGTGACAGGTCTTAAGTATGCAGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTTCAAGACTCTATCAAGGGCCTCGCAGACTACGTTGAGGGGGAAACATCTGACTTTGAAACTGTTGGAGTT
AAGGCAGTGGATGACTATACTCTTCAATATACTTTGAATAAGCCGGAATCTTACTGGAATTCTAAGACTACTGGGGGTAT
TTTGAGTCCTGTAAATGAAGCTTTTTTGAAATCTAAGGGAGATGACTTTGGAAGTGTAACACCATCCAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAATTTGATAAAAACCCTAATTACTGGGACAAGGAT
AATGTGAAAATTGAGAAAGTGAAGCTATCTTTCTTTGACGGTTCTGACCAAGATAGTTTGGCGAGAGGATTTTTGGAAGG
GAACTACTCGGACGGTCGTATCTTCCCAACAAGTTCAGTCTTTGCTGAACTCAAGAAGGGAAACGAGGACAAGATTACCT
ATACACCACAAAACTCAGTTACTTTCTACTATCTTTTCAACGTTAATCGTCAAAGCTACAAGCAGACCATGAAACAGTCT
GATAAGGAAAAGACAGATTCACTTGCAGCCATGCGAAATAAGGATTTCCGTCAGGCTGTCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGATCGTATCTTGCGTAACACGCTTATCCCAAGTGATTTTGTCC
AAATCGGTGGTAAAAACTTTGGAGATGTTGTCAATGAAAAGATTATTAACTATGGTACAGAGTGGTCGAATATCAATTTG
AATGATGCGCAACCTGCCTTTTTGAATGCTGAAAAAGCCAAGGCAGCATTTGCTAAAGCTAAAGAAACCTTGCAAGCAGA
AGGCGTGACCTTCCCAATTCATTTGGATATGCCGGTTGACCAGACGGCCAAGTTAGATGTGCAACAAGCAAGTTCCTTTA
AGCAGACAGTGGAAGAAACCCTTGGGGCGGACAACGTTGTGATTGACGTGATTCAACTTTCTCCAGACGAGAAGGATCAA
GCTACATTCTTTGCAGATACAGCTGAACAAAAGGACTATGACATTGATATTTCAGGTTGGAGCGGAGATTACTCAGATCC
GAAAACTTATCTTGATCTCTTGGATCCAGAGTCAGGTTCACAGCTTAATAATATTGGGTTAACTGCTGGAAAAGATAATG
AAGTAAAAGAAAAAATTGGACTTTCTGCTTACAAGAAGTTACTAGATGAAGCAGATAGCGAAGTTGAAAATACTCAGGCT
CGTTATGAAAAATTTGCTGAAGTACAAGCTTGGTTGACTGACAGCGCCCTCTTCCTACCAGTTCAAAGTGGCGGAGCCAA
CCCAATCTTCCGTAAGACTGTGCCGTTTACAGGAGCCTTCTCGTTCGTTGGTCATAAGGGAGATGCTGATAACTATAAAT
ATGTTGAACTGCAAAAAGAGCCGGTAACTGCGAAACAGTACCAAGAACTCTATGACAAATGGCTAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAATCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.167

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

54.863

100

0.552

Multiple sequence alignment