Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7Z_RS09050 Genome accession   NZ_OZ217343
Coordinates   1824378..1826357 (-) Length   659 a.a.
NCBI ID   WP_218774087.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819378..1831357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS09030 (SMIG22_17800) gpsB 1820453..1820794 (-) 342 WP_000146532.1 cell division regulator GpsB -
  ACLV7Z_RS09035 (SMIG22_17810) - 1820864..1821391 (-) 528 WP_218774090.1 DUF1273 domain-containing protein -
  ACLV7Z_RS09040 (SMIG22_17820) recU 1821458..1822054 (+) 597 WP_218774089.1 Holliday junction resolvase RecU -
  ACLV7Z_RS09045 (SMIG22_17830) pbp1a 1822051..1824213 (+) 2163 WP_218774088.1 penicillin-binding protein PBP1A -
  ACLV7Z_RS09050 (SMIG22_17840) amiA 1824378..1826357 (-) 1980 WP_218774087.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Z_RS09055 (SMIG22_17850) glf 1826593..1827693 (-) 1101 WP_218774086.1 UDP-galactopyranose mutase -
  ACLV7Z_RS09060 (SMIG22_17860) amiA3 1827981..1829939 (-) 1959 WP_050116694.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72664.36 Da        Isoelectric Point: 4.8239

>NTDB_id=1170229 ACLV7Z_RS09050 WP_218774087.1 1824378..1826357(-) (amiA) [Streptococcus mitis isolate S. mitis G22]
MKTRKVLALAGVTLLAAGVLAACSGGSGAQGEKTFAFTYETHPDNLNYLTTGKAATSEITSNVIDGLLENDKYGNLVSSL
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKAEALYLVQDSIKGLDAYAKGEITDFAQVGI
KALDDQTVQYTLNKPETFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSTTYLVGTNIDRQSYKHTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNIFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVVIDIQQLQKDELL
NVTLFAETAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSKTGRPILSKMVPFTIPFALSGNKGTSDPVLYKYLELQDKAVTADEYQKAQEKWM
KEKAESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1170229 ACLV7Z_RS09050 WP_218774087.1 1824378..1826357(-) (amiA) [Streptococcus mitis isolate S. mitis G22]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTAACCTTATTAGCAGCTGGTGTTTTAGCTGCTTGTTCTGGGGGTTC
AGGCGCTCAAGGTGAAAAAACCTTTGCATTTACCTACGAGACACATCCGGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCAACTTCTGAGATTACTAGTAATGTGATCGATGGATTGCTTGAAAATGATAAATACGGGAACCTTGTTTCTTCATTG
GCAGAAGACTGGTCGGTCTCTAAGGATGGCTTGACTTATACTTATAAGATTCGTCAAGATGCCAAGTGGTATACATCTGA
GGGAGAAGAGTACGCTCCTGTTAAGGCTCAGGACTTTGTAACAGGACTTAAATATGCAACAGATAAGAAAGCAGAAGCCC
TTTACTTGGTACAGGATTCAATCAAAGGTCTGGATGCCTATGCCAAAGGTGAAATCACAGACTTTGCTCAAGTCGGGATT
AAAGCCCTTGACGATCAGACAGTCCAATACACCTTGAACAAACCTGAAACTTTTTGGAATTCTAAAACAACCATGGGTGT
GCTTGCGCCAGTCAATGAAGAGTTTTTGAATTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCTTGT
ATAACGGCCCTTATTTGTTGAAATCCATTGTAACTAAATCCTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGATAAA
GACAATGTGCATATTGACAAGGTCAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCTCGTCTTTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAAGACAATATTG
TCTATACTCAACAAGACTCTACGACTTATTTAGTAGGAACAAATATTGACCGTCAATCTTATAAACACACATCTAAGACT
AGCGACGAACAAAAGACATCTACTAAAAAAGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGACCG
TACAGCTTATGCTTCTCAGCTAAACGGACAAACTGGGGCAAGCAAAATTTTGCGTAATATTTTTGTTCCGCCAACATTTG
TCCAAGCAGATGGTAAGAACTTTGGTGATATGGTCAAAGAAAAATTGGTGACTTACGGGGATGAATGGAAGGATGTGAAC
CTTGCTGATGCCCAAGATGGACTCTACAATCCTGAAAAAGCTAAAGCAGAATTTGCCAAAGCCAAATCAGCCCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCTGTTGACCAAACAGCAACTACAAAAGTTCAACGTGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGAACTGATAATGTCGTTATTGATATCCAACAATTGCAAAAAGATGAATTGCTT
AATGTAACTCTATTTGCAGAAACTGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATTATCAAACCTTCTGTAGGAGAAAGTACTAAAACATATTTAGGATTTGACTCAGGGG
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAAGCTGGTGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCAGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTGACC
CAGTCTTGTATAAATACCTTGAACTTCAAGACAAGGCAGTTACTGCAGATGAATATCAAAAAGCTCAAGAAAAATGGATG
AAAGAAAAAGCAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.333

100

0.584
  amiA3 Streptococcus thermophilus LMD-9

58.182

100

0.583
  amiA3 Streptococcus thermophilus LMG 18311

57.727

100

0.578

Multiple sequence alignment