Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7Z_RS07125 Genome accession   NZ_OZ217343
Coordinates   1392931..1394898 (-) Length   655 a.a.
NCBI ID   WP_218773899.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387931..1399898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS07090 (SMIG22_13900) - 1388566..1388760 (-) 195 WP_023932855.1 DUF3272 domain-containing protein -
  ACLV7Z_RS07095 (SMIG22_13910) dnaX 1388788..1390443 (-) 1656 WP_218773982.1 DNA polymerase III subunit gamma/tau -
  ACLV7Z_RS07100 (SMIG22_13920) - 1390443..1390940 (-) 498 WP_218773900.1 GAF domain-containing protein -
  ACLV7Z_RS07105 (SMIG22_13930) rpsA 1391027..1392229 (-) 1203 WP_061439368.1 30S ribosomal protein S1 -
  ACLV7Z_RS07120 (SMIG22_13960) - 1392603..1392833 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  ACLV7Z_RS07125 (SMIG22_13970) amiA3 1392931..1394898 (-) 1968 WP_218773899.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Z_RS07130 (SMIG22_13980) - 1394921..1395943 (-) 1023 WP_218773898.1 branched-chain amino acid aminotransferase -
  ACLV7Z_RS07135 (SMIG22_13990) parC 1396078..1398549 (-) 2472 WP_218773897.1 DNA topoisomerase IV subunit A -
  ACLV7Z_RS07140 (SMIG22_14000) - 1398904..1399464 (-) 561 WP_000570839.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72809.42 Da        Isoelectric Point: 5.1344

>NTDB_id=1170215 ACLV7Z_RS07125 WP_218773899.1 1392931..1394898(-) (amiA3) [Streptococcus mitis isolate S. mitis G22]
MKSKKWILTTGLILSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDIIGNVVDGLMENDKYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNAPESFWNSKVTTATMLPVNEEFLKASGKNYGEVSPAGILYNGPYFLKTLTSKSLIEYEKNPNYWDK
ENVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEEYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLEDAVSETTDLE
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMRLQKDIVTTKEYDEALKKWQKEKL
ESNSKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170215 ACLV7Z_RS07125 WP_218773899.1 1392931..1394898(-) (amiA3) [Streptococcus mitis isolate S. mitis G22]
ATGAAATCGAAAAAGTGGATTTTAACAACAGGACTTATCCTAAGCACAACAGCTCTTTTAGCAGCCTGTGGAAAAGCTGA
TAAAGAAGCAGATGCTCCGACAACATTTTCTTATGTCTATGCAGTGGATCCAGCATCCTTGGACTACAGCATAGCAACGC
GTACATCCACAACAGATATTATCGGGAATGTCGTTGATGGTTTGATGGAAAATGATAAATATGGTAATGTTATTCCTTCT
TTGGCTGAGGATTGGTCTGTCTCAAAAGATGGATTGACTTATACCTATAAACTTCGTAAGGGAGTGAAATGGTACACATC
AGAAGGCGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTCGCTGATGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATTAAAGGCTTAGACGCCTACATGACTGGTGAAACCAATGATTTCTCTACAGTTGGT
GTTAAAGCTTTGGATGACTACACAGTTGAGTATACATTGAATGCGCCAGAAAGTTTCTGGAATTCAAAAGTGACCACAGC
GACGATGTTGCCTGTAAATGAAGAGTTTTTAAAGGCATCAGGAAAGAATTACGGAGAGGTTAGCCCAGCAGGTATTCTCT
ACAATGGTCCTTATTTCTTAAAAACATTGACTTCTAAATCGTTGATTGAATATGAAAAAAATCCAAATTACTGGGATAAA
GAAAATGTTAAAATTGAGAAGATTAAATTGACCTACTACGATGGTTCAGATCAGGAGTCTTTGATCCGTAGCTTCTCCTC
TGGTGCTTATACGACAGCCCGTCTCTTCCCAAGTAGTTCAAACTTTGCTTCAACTTTGGAAGAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGCAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGCGAAGAGCAAAAGACTTCTACAAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
TCATTCGTATGCTGCCCAGCTAAACGGTGAAGATGGTGCGGACAAGATTATTCGTAACAGCCTTGTTCCAGATAACTTCG
TACAAGCAGGTGGTAAGAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCTGCGTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGAGTAACCTTCCCAATTCACTTGGATGTCCCGGTTGAACAAACAGATACTATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTACTTCAAATGACAGATAATGAAAAAGAA
ACGATTACATCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
TCCAGCGTCTTACTTGAATATTATGGATCCGAAATCTGGTTCTGCCATGAAACACCTTGGTATTACAAAAGGAAAAGATA
AGGATGTTGTAGCTAAACTTGGTTTGGATCAATATAAGAAATTGTTAGAAGATGCTGTTTCTGAGACCACTGACCTAGAG
AAGAGATATGAAAAATATGCCAAAGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCTTCATCTGGTGG
TTCTCCAGTTGTAAGTAACGTAGTACCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGGGATCCATATATCTTTA
AAGGAATGAGATTGCAAAAAGATATTGTTACAACAAAAGAATATGACGAAGCTCTTAAAAAATGGCAAAAAGAAAAATTG
GAATCCAATAGCAAATACCAAAAAGAACTAGAAAAGCATATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.273

100

0.527
  amiA3 Streptococcus thermophilus LMG 18311

51.667

100

0.521
  amiA Streptococcus salivarius strain HSISS4

51.672

100

0.519

Multiple sequence alignment