Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AW03_RS02045 Genome accession   NZ_CP007173
Coordinates   407455..408405 (+) Length   316 a.a.
NCBI ID   WP_015382768.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402455..413405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS02020 (AW03_003730) rapC 403915..405063 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  AW03_RS02025 (AW03_003740) phrC 405047..405169 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  AW03_RS20720 yczM 405269..405358 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  AW03_RS20725 (AW03_003750) yczN 405440..405553 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  AW03_RS02040 (AW03_003760) thrD 405706..407070 (-) 1365 WP_015382767.1 aspartate kinase -
  AW03_RS02045 (AW03_003770) ceuB 407455..408405 (+) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  AW03_RS02050 (AW03_003780) yclO 408398..409345 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -
  AW03_RS02055 (AW03_003790) yclP 409339..410097 (+) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  AW03_RS02060 (AW03_003800) yclQ 410119..411072 (+) 954 WP_015482797.1 petrobactin ABC transporter substrate-binding protein YclQ -
  AW03_RS02065 (AW03_003810) cdaE 411119..412537 (-) 1419 WP_015382772.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=117018 AW03_RS02045 WP_015382768.1 407455..408405(+) (ceuB) [Bacillus subtilis HJ5]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLIAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=117018 AW03_RS02045 WP_015382768.1 407455..408405(+) (ceuB) [Bacillus subtilis HJ5]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTTTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAACAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCC
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GATTGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTAGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCCCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528

Multiple sequence alignment