Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV65_RS08620 Genome accession   NZ_OZ217342
Coordinates   1736842..1738800 (-) Length   652 a.a.
NCBI ID   WP_411865059.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731842..1743800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS08610 (SMIB22_16970) amiA3 1733345..1735324 (-) 1980 WP_000857588.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS08615 (SMIB22_16980) glf 1735559..1736659 (-) 1101 WP_411865058.1 UDP-galactopyranose mutase -
  ACLV65_RS08620 (SMIB22_16990) amiA3 1736842..1738800 (-) 1959 WP_411865059.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS08625 (SMIB22_17000) amiA 1739027..1740994 (-) 1968 WP_411865060.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS08630 (SMIB22_17010) - 1741265..1742875 (-) 1611 WP_411865061.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72605.74 Da        Isoelectric Point: 5.0431

>NTDB_id=1170144 ACLV65_RS08620 WP_411865059.1 1736842..1738800(-) (amiA3) [Streptococcus mitis isolate S. mitis B22]
MNTKKRVLSAGLTFAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKIGVKA
IDDQTVEYTLVRPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTSKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWAGINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGDDNIVIDVQQLSTDDFNNVA
FLAPTAADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAKKDKEKITSLGLDTYTKILKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQFEEAKSKWEQESKKAI
EKAQKEAEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170144 ACLV65_RS08620 WP_411865059.1 1736842..1738800(-) (amiA3) [Streptococcus mitis isolate S. mitis B22]
ATGAATACAAAAAAGCGTGTCCTTAGTGCAGGCCTGACTTTTGCAGCTGCTTTGCTTTTAGCTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTACTTGTTAGACTACTACGCTGATA
ATACGGCCATCATTACCAACCTAGTTGATGGTTTGCTTGAAAATGACAACCACGGAAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCGAGCGACGGTCTGACTTATACCTACAAATTGAGAAAAGATGCCAAATGGTTCACGGCTGACGGTGA
AGAATATGCCCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTATGCAGTGGACAATAAATCCCAGGCCATTGACT
TGATTCAAAATTCAATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGATTGGGGTGAAGGCC
ATTGACGACCAGACTGTTGAGTATACTTTGGTACGCCCAGAACCTTACTGGAACTCAAAAACAACCAACAGTATTCTTTT
CCCGGTAAACGAAGAGTTTCTAAATTCAAAAGGGAAAGATTTTGGGACCCTATCTCCAGATAGCATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATTGAGTATGTGAAGAACCCGCATTACTATGATCATGACAAAGTA
TCGATTGAACACGTGAAATTAGCTTACTTTGATGGTTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCCTA
TTCAATCGCTGGGGTTTATCCAAATAGTTCAAACTTTGCTAAGACTAAGGAAAAATATAAGGATAATATCGTCTATAGCT
TGCAGGATAAGACTTCTTGGTATTTCAATTTTAACGTCAACCGTAAGGCTTACAACCATACGTCTAAAACGACAGATGAG
CAGAAGAAGTCGACTGAGACAGCTGTCTTGAACAAGAACTTCCGCCAAGCAGTGAACTTTGCCTTGGACCGCACAGCCTA
TTCTGCTCAGTCAAATGGGGAAGAAGCAGCTAGCAAGACTCTTCGTAACACCCTAGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTCGCTTCTAAATTGGTCAACTATGGAACAGAGTGGGCAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCTATTCACTTGGATGTTGCAGTTGATCAGACAAGTAAAAATGCTGTGACAGGCATGAACTCAGTTAAGCAGA
CCCTTGAGTCAGTTTTGGGTGATGATAACATTGTCATTGATGTTCAGCAACTTTCAACAGATGATTTTAATAACGTGGCC
TTCTTAGCGCCAACAGCAGCTGATCGAGACTACGATTTGAACTTTGATGGTTGGGTGGGTGACTATCAGGATCCATCAAC
TTATCTTAATCCTTTCAATGCAGAGGATGGATTCTACCTTAAGATTTTTGGACTAGATGCCAAGAAAGATAAGGAAAAAA
TCACTAGCCTAGGTCTGGATACCTACACTAAGATACTTAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAACGTTAC
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCTATGTCAAGTGGTGGAACAGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGCTATTCATTGGTTGGTATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGACACTGTGACGACCAAACAGTTTGAAGAAGCTAAAAGTAAATGGGAACAAGAAAGTAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAAACATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.076

100

0.505
  amiA Streptococcus salivarius strain HSISS4

49.695

100

0.5
  amiA3 Streptococcus thermophilus LMG 18311

49.619

100

0.5

Multiple sequence alignment