Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV65_RS06670 Genome accession   NZ_OZ217342
Coordinates   1305560..1307527 (-) Length   655 a.a.
NCBI ID   WP_173274849.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300560..1312527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS06630 (SMIB22_13000) tnpA 1300589..1301053 (-) 465 WP_000057429.1 IS200/IS605 family transposase -
  ACLV65_RS06635 (SMIB22_13010) rpsA 1301254..1302456 (-) 1203 WP_001001631.1 30S ribosomal protein S1 -
  ACLV65_RS06650 (SMIB22_13040) - 1302829..1303059 (-) 231 WP_033683467.1 DUF2969 domain-containing protein -
  ACLV65_RS06655 (SMIB22_13050) pcp 1303227..1303871 (-) 645 WP_000699369.1 pyroglutamyl-peptidase I -
  ACLV65_RS06660 (SMIB22_13060) - 1303886..1304809 (-) 924 WP_000137263.1 DUF979 domain-containing protein -
  ACLV65_RS06665 (SMIB22_13070) - 1304806..1305495 (-) 690 WP_000454773.1 DUF969 domain-containing protein -
  ACLV65_RS06670 (SMIB22_13080) amiA3 1305560..1307527 (-) 1968 WP_173274849.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS06675 (SMIB22_13090) - 1307550..1308572 (-) 1023 WP_173233839.1 branched-chain amino acid aminotransferase -
  ACLV65_RS06680 (SMIB22_13100) parC 1308707..1311178 (-) 2472 WP_411864852.1 DNA topoisomerase IV subunit A -
  ACLV65_RS06685 (SMIB22_13110) - 1311507..1312067 (-) 561 WP_050222938.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72722.34 Da        Isoelectric Point: 5.2053

>NTDB_id=1170131 ACLV65_RS06670 WP_173274849.1 1305560..1307527(-) (amiA3) [Streptococcus mitis isolate S. mitis B22]
MKSKKWLLTAGVVLSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDIIGNVVDGLMENDKYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNAPESFWNSKVTTATMLPVNEEFLKASGKNYGEVSPAGILYNGPYFLKTLTSKSLIEYEKNPNYWDK
ENVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLEDAVSETTDLE
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYDEALKKWQKEKL
ESNSKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170131 ACLV65_RS06670 WP_173274849.1 1305560..1307527(-) (amiA3) [Streptococcus mitis isolate S. mitis B22]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTTTTAGCAGCCTGTGGAAAAGCTGA
TAAAGAAGCAGATGCTCCGACAACATTTTCTTATGTTTATGCAGTGGATCCAGCATCCTTGGACTACAGCATAGCAACGC
GTACATCCACAACAGATATTATCGGGAATGTCGTTGATGGTTTGATGGAAAATGATAAATATGGTAATGTTATTCCTTCT
TTGGCTGAGGATTGGTCTGTCTCAAAAGATGGATTGACTTATACCTATAAACTTCGTAAAGGAGTGAAATGGTACACTTC
AGAAGGTGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTGGCTGATGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCCATCAAGGGCTTGGACGCCTACATGACTGGTGAAACCAATGATTTCTCTACAGTTGGT
GTTAAAGCTTTGGATGACTACACAGTTGAGTATACATTGAATGCGCCAGAAAGTTTCTGGAATTCAAAAGTTACAACAGC
GACGATGTTACCTGTAAATGAAGAGTTTTTAAAGGCATCAGGAAAGAATTACGGAGAGGTTAGCCCAGCAGGCATTCTCT
ACAATGGTCCTTATTTCTTAAAAACATTGACTTCTAAATCGTTGATTGAATATGAAAAAAATCCAAATTACTGGGATAAA
GAAAATGTTAAAATTGAGAAGATTAAATTGACCTACTACGATGGTTCAGATCAGGAATCGTTGATTCGTAGCTTCTCTTC
AGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATTA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGTGAGGAGCAAAAGACTTCTACAAAAGAAGCGATGCTCAATAAGGATTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
TCATTCGTATGCTGCCCAGCTAAACGGTGAAGATGGTGCGGACAAGATTATTCGTAACAGCCTTGTTCCAGATAACTTTG
TGCAAGCTGGTGGTAAGAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCTGCTTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACCTTCCCAATTCACTTGGATGTCCCGGTTGAACAAACAGATACTATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTACTTCAAATGACAGATAATGAAAAAGAA
ACGATTACATCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
TCCAGCGTCTTACTTGAATATTATGGATCCAAAATCTGGTTCTGCCATGAAACACCTTGGTATTACGAAAGGAAAAGATA
AGGATGTTGTCGCGAAACTTGGTTTGGATCAATATAAGAAATTGTTAGAAGATGCTGTTTCTGAGACCACTGACCTAGAG
AAGAGATATGAAAAATATGCTAAAGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCTTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGGGATCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATATGACGAAGCTCTTAAAAAATGGCAAAAAGAAAAATTG
GAATCCAATAGCAAATACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.533
  amiA3 Streptococcus thermophilus LMG 18311

52.273

100

0.527
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525

Multiple sequence alignment