Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV65_RS03535 Genome accession   NZ_OZ217342
Coordinates   677285..679243 (+) Length   652 a.a.
NCBI ID   WP_411864539.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 672285..684243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS03510 (SMIB22_06850) - 672422..672934 (+) 513 WP_411864535.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  ACLV65_RS03515 (SMIB22_06860) - 672918..673568 (+) 651 WP_411864536.1 DUF1803 domain-containing protein -
  ACLV65_RS03520 (SMIB22_06870) - 673668..673859 (+) 192 WP_024478880.1 CsbD family protein -
  ACLV65_RS03525 (SMIB22_06880) - 673906..675351 (-) 1446 WP_411864537.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ACLV65_RS03530 (SMIB22_06890) - 675457..677079 (+) 1623 WP_411864538.1 putative polysaccharide biosynthesis protein -
  ACLV65_RS03535 (SMIB22_06900) amiA 677285..679243 (+) 1959 WP_411864539.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS03540 (SMIB22_06910) - 679279..679443 (+) 165 WP_411864540.1 hypothetical protein -
  ACLV65_RS03545 (SMIB22_06920) - 679437..680483 (+) 1047 WP_411864541.1 DUF6895 family protein -
  ACLV65_RS03550 - 680532..681266 (+) 735 Protein_647 ABC transporter ATP-binding protein -
  ACLV65_RS03555 - 681453..682175 (+) 723 WP_262082111.1 ABC transporter ATP-binding protein -
  ACLV65_RS03560 (SMIB22_06940) - 682481..682936 (+) 456 WP_411864542.1 hypothetical protein -
  ACLV65_RS03565 (SMIB22_06950) - 683101..684195 (+) 1095 WP_411864543.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72732.12 Da        Isoelectric Point: 4.7811

>NTDB_id=1170117 ACLV65_RS03535 WP_411864539.1 677285..679243(+) (amiA) [Streptococcus mitis isolate S. mitis B22]
MKKSKSKYLTLAGLVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKNSEALYLVQDSVAGLDDYITGKTSDFSTVGV
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSYEGIKEKYKDDIVYSMQDATSYFLNFNLDRQSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNPEKAKAKFAEAKKELEAKGVTFPIHLDKNIELTNKAEIQGINSMKQSIESVLGAENVVIDVHLLSTEDYDS
SGYLAQTAAQKDYDLYNGGWSADYLDPSSYLDIFSVKNGGVLQSLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDIAKR
YEKYAEIQAWLVDSSLAIPNVSLGGTPTLRKIVPFSTPYSLAGNKGVESYKYLKVQDKTVTTDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170117 ACLV65_RS03535 WP_411864539.1 677285..679243(+) (amiA) [Streptococcus mitis isolate S. mitis B22]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAGTTTTATTGAGTGCCTGTGGAAA
TTCTAGCACAGCATCAAAAACATACAATTATGTTTACTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACAACAAATGATATTGTGACCAACCTGGTAGATGGTCTTATGGAAAATGACCAATATGGGAACTATGTTCCATCCTTG
GCTGAGGATTGGACTGTTTCTAAGGACGGTTTAACCTATACCTACAAACTTCGTAAGGATGCTAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCTCAGGATTTTGTAACCGGTTTGCAATATGCAGCTGATAAAAATTCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGGAAAACAAGCGACTTTTCAACTGTCGGTGTC
AAGGCACTTGATGACCAAACGGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTCAAATTGACCTACTATGATGGTAGTGACCAAGACGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTACGCTCGTCTCTATCCGAATAGTTCAAGTTATGAAGGAATTAAAGAAAAATACAAAGATGATATCGTCT
ATAGCATGCAAGATGCCACTTCTTACTTCTTAAACTTTAATCTGGATAGACAATCTTATAAATTCACTTCCAAGACAAGT
GATGCTGAAAAGAAATCGACTCAAGAAGCGGTTCTTAATAAAAACTTCCGTCAAGCTATTAATTTTGCCTATGATCGGAC
AGCTTACGGGGCTCAATCTCAAGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTCGTAA
GTATCAAGGGAAAAGACTTTGGTGAAGTAGTGGCTTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGAATCAACTTC
GCGGATGCCCAAGATCCATACTACAATCCAGAGAAAGCCAAAGCCAAATTTGCAGAAGCTAAGAAAGAATTAGAAGCTAA
GGGGGTAACATTCCCTATCCACTTAGATAAAAATATAGAGTTGACCAATAAGGCTGAAATTCAAGGAATCAATTCCATGA
AGCAATCAATTGAGTCTGTCTTAGGTGCAGAAAATGTTGTGATTGATGTCCACCTACTTTCTACAGAGGACTATGATAGT
TCAGGTTATCTAGCTCAAACAGCTGCGCAAAAAGACTACGATCTCTACAATGGTGGTTGGAGTGCGGACTATCTTGATCC
ATCTAGCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAGTCTTGGACTCGAGCCTGGTGAAGCCAATG
ACAAGGCCAAGGCTGTTGGATTGGATGTCTACACTCAAATGTTGGAAGAAGCTAATAAGGAACAAGATATTGCAAAACGC
TATGAAAAGTATGCTGAAATCCAAGCTTGGTTAGTAGATAGCTCTCTAGCAATTCCAAATGTTTCACTTGGTGGAACACC
AACATTGAGAAAAATCGTTCCTTTCTCAACACCATATTCATTGGCTGGTAATAAAGGGGTCGAATCCTATAAATACCTTA
AAGTACAAGATAAGACAGTCACAACAGACGAATATGAAAAAGCCAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.657

100

0.558
  amiA3 Streptococcus thermophilus LMG 18311

55.42

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.42

100

0.557

Multiple sequence alignment