Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV65_RS01525 Genome accession   NZ_OZ217342
Coordinates   273886..275850 (+) Length   654 a.a.
NCBI ID   WP_411864347.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 268886..280850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01495 (SMIB22_02870) - 269527..270918 (+) 1392 WP_411864344.1 Cof-type HAD-IIB family hydrolase -
  ACLV65_RS01500 (SMIB22_02880) - 270915..271118 (+) 204 WP_411864345.1 hypothetical protein -
  ACLV65_RS01505 (SMIB22_02890) - 271191..271643 (-) 453 WP_031223038.1 universal stress protein -
  ACLV65_RS01510 (SMIB22_02900) - 271805..272098 (+) 294 WP_173254593.1 hypothetical protein -
  ACLV65_RS01515 (SMIB22_02910) - 272255..273469 (+) 1215 WP_411864346.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV65_RS01520 (SMIB22_02920) rpmH 273614..273748 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  ACLV65_RS01525 (SMIB22_02930) amiA 273886..275850 (+) 1965 WP_411864347.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72758.63 Da        Isoelectric Point: 4.5015

>NTDB_id=1170095 ACLV65_RS01525 WP_411864347.1 273886..275850(+) (amiA) [Streptococcus mitis isolate S. mitis B22]
MKKSKVMLFGAMALTAGLALAACGSSQSSNAEKTYSYVFTSNPDTLDYITSTRGSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLAEYVEGETSDFETVGV
KAVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSLARGFLEGNYSDGRIFPTSSVFDQLKKGNEDKITYTPQNSITFYYLFNVNRQSYKQTMKQS
DKEKTDSLAAMQNKDFRQAVNFAFDRHAYAAQTNGEDGADRILRNTLIPSDFVQIGGKNFGDVVNEKIINYGTEWSNINL
NDAQPAFLNAEKAKAAFAKAKETLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGADNVVIDVIQLSPDEKDQ
ATFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPESGSQLNNIGLTAGKDNEVKEKIGLSAYKKLLDEADSEVENTQA
RYEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYVELQKEPVTAKQYQELYDKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1170095 ACLV65_RS01525 WP_411864347.1 273886..275850(+) (amiA) [Streptococcus mitis isolate S. mitis B22]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTTTAGCAGCGTGTGGGTCTTCCCA
ATCAAGTAATGCTGAGAAAACCTACTCTTATGTATTTACTAGTAATCCTGATACCTTGGATTACATTACGTCAACGCGTG
GCTCTACTTCTAGTATTACGACTAACTTGATTGATGGCTTGTTAGAAAATGATCAGTATGGTAATCTCATTCCATCTATG
GCTGAGTCATGGACGGTGTCAAAAGATGGTTTGACCTACACTTATAAAATCCGTCAGGGGGCGAAATGGTACACTTCAGA
GGGCGAAGAGTATGCGGATGTAACGGCTCATGACTTTGTGACAGGTCTCAAGTATGCAGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTTCAAGACTCTATCAAGGGCCTCGCAGAGTACGTTGAGGGGGAAACATCTGACTTTGAGACTGTTGGAGTT
AAGGCAGTGGATGACTATACTCTTCAATATACTTTGAATAAGCCGGAATCTTACTGGAATTCTAAGACTACTGGGGGCAT
TTTGAGTCCTGTAAATGAGGCTTTTTTGAAATCTAAAGGAGATGACTTTGGAAGTGTAACACCATCCAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAATTTGATAAAAATCCTAATTACTGGGATAAGGAC
AATGTGAAAATTGAGAAAGTGAAGCTTTCTTTCTTTGACGGTTCTGACCAAGATAGTTTGGCGAGAGGATTTTTGGAAGG
GAACTACTCGGACGGTCGTATCTTCCCGACAAGTTCAGTGTTTGATCAGTTGAAAAAAGGGAATGAGGACAAAATCACCT
ACACACCACAAAACTCAATTACCTTCTATTATCTTTTTAACGTCAATCGTCAAAGCTACAAGCAGACCATGAAACAGTCT
GATAAGGAAAAGACAGATTCACTTGCGGCCATGCAAAATAAGGATTTCCGTCAGGCTGTCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCACAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACGCTTATCCCAAGTGATTTTGTCC
AAATCGGTGGTAAAAACTTTGGAGATGTTGTCAATGAAAAGATTATTAACTATGGTACAGAGTGGTCGAATATCAATTTG
AATGATGCGCAACCTGCCTTTTTGAATGCTGAAAAGGCCAAGGCAGCATTTGCTAAAGCTAAAGAAACCTTGCAAGCAGA
AGGCGTGACCTTCCCAATTCATTTGGATATGCCAGTTGATCAGACGGCCAAGTTAGATGTGCAACAAGCAAGTTCTTTTA
AGCAGACAGTGGAAGAAACCCTTGGGGCGGACAACGTTGTGATTGACGTGATTCAACTTTCTCCAGACGAGAAGGATCAA
GCTACATTCTTTGCAGATACAGCTGAACAAAAGGACTATGACATTGATATTTCAGGTTGGAGCGGAGATTACTCAGATCC
GAAAACTTATCTTGATCTCTTGGATCCAGAGTCAGGTTCTCAGCTTAATAATATTGGGTTGACTGCTGGAAAAGATAATG
AAGTAAAAGAAAAAATTGGACTTTCTGCTTACAAGAAGTTACTAGATGAAGCAGATAGCGAAGTTGAAAATACTCAGGCT
CGTTATGAAAAATTTGCTGAAGTCCAAGCTTGGTTGACTGACAGCGCCCTCTTCCTACCAGTTCAAAGTGGCGGAGCCAA
CCCAATCTTCCGTAAGACTGTACCGTTCACAGGAGCCTTCTCGTTCGTTGGTCATAAGGGAGATGCTGATAACTACAAAT
ATGTTGAACTGCAAAAAGAGCCGGTAACTGCGAAACAGTACCAGGAACTCTATGATAAATGGCTAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.927

100

0.563
  amiA3 Streptococcus thermophilus LMD-9

54.711

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.407

100

0.547

Multiple sequence alignment