Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ACLV65_RS01480 Genome accession   NZ_OZ217342
Coordinates   267274..268284 (+) Length   336 a.a.
NCBI ID   WP_050253459.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 262274..273284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01450 (SMIB22_02790) - 263251..263457 (+) 207 WP_411864340.1 hypothetical protein -
  ACLV65_RS01455 (SMIB22_02800) - 263454..263648 (+) 195 WP_057488196.1 hypothetical protein -
  ACLV65_RS01460 (SMIB22_02810) - 263635..264519 (+) 885 WP_411864341.1 ABC transporter ATP-binding protein -
  ACLV65_RS01465 (SMIB22_02820) - 264521..265258 (+) 738 WP_411863384.1 ABC transporter permease -
  ACLV65_RS01470 (SMIB22_02830) - 265258..266355 (+) 1098 WP_411863385.1 sensor histidine kinase -
  ACLV65_RS01475 (SMIB22_02840) - 266356..266955 (+) 600 WP_164226908.1 response regulator transcription factor -
  ACLV65_RS01480 (SMIB22_02850) ccpA 267274..268284 (+) 1011 WP_050253459.1 catabolite control protein A Regulator
  ACLV65_RS01485 - 268348..268470 (+) 123 WP_411864342.1 hypothetical protein -
  ACLV65_RS01490 (SMIB22_02860) - 268499..269461 (-) 963 WP_411864343.1 asparaginase -
  ACLV65_RS01495 (SMIB22_02870) - 269527..270918 (+) 1392 WP_411864344.1 Cof-type HAD-IIB family hydrolase -
  ACLV65_RS01500 (SMIB22_02880) - 270915..271118 (+) 204 WP_411864345.1 hypothetical protein -
  ACLV65_RS01505 (SMIB22_02890) - 271191..271643 (-) 453 WP_031223038.1 universal stress protein -
  ACLV65_RS01510 (SMIB22_02900) - 271805..272098 (+) 294 WP_173254593.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37064.10 Da        Isoelectric Point: 5.5389

>NTDB_id=1170094 ACLV65_RS01480 WP_050253459.1 267274..268284(+) (ccpA) [Streptococcus mitis isolate S. mitis B22]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIFMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKEALKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEEFEIITSDDSQIARFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERRSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=1170094 ACLV65_RS01480 WP_050253459.1 267274..268284(+) (ccpA) [Streptococcus mitis isolate S. mitis B22]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTAATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCGGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTTTATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACGATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAGCCTTGAAAAAAGCAGGAATCGCTT
ATAGTGAGGGTTTGGTATTTGAATCTAAGTATAGCTATGATGATGGTTACGCCTTGGCAGAGCGTTTGATTTCATCGAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGTGTCTTGAACGGTTTGGCTGATAAGGGTGTGTCAGTACC
AGAAGAATTTGAAATTATTACTAGTGATGATTCACAAATTGCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGATCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCACAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGATTGACAGAACGTCGTTCAACACGAAAACGGAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

97.917

100

0.979

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568


Multiple sequence alignment