Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7Q_RS06780 Genome accession   NZ_OZ217341
Coordinates   1370922..1372889 (-) Length   655 a.a.
NCBI ID   WP_218757599.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365922..1377889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS06740 (SMIC22_13220) - 1366032..1366529 (-) 498 WP_023932849.1 GAF domain-containing protein -
  ACLV7Q_RS06745 (SMIC22_13230) rpsA 1366616..1367818 (-) 1203 WP_001001631.1 30S ribosomal protein S1 -
  ACLV7Q_RS06760 (SMIC22_13260) - 1368191..1368421 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  ACLV7Q_RS06765 (SMIC22_13270) pcp 1368589..1369233 (-) 645 WP_000699369.1 pyroglutamyl-peptidase I -
  ACLV7Q_RS06770 (SMIC22_13280) - 1369248..1370171 (-) 924 WP_218757598.1 DUF979 domain-containing protein -
  ACLV7Q_RS06775 (SMIC22_13290) - 1370168..1370857 (-) 690 WP_050242451.1 DUF969 domain-containing protein -
  ACLV7Q_RS06780 (SMIC22_13300) amiA3 1370922..1372889 (-) 1968 WP_218757599.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS06785 (SMIC22_13310) - 1372912..1373934 (-) 1023 WP_218757600.1 branched-chain amino acid aminotransferase -
  ACLV7Q_RS06790 (SMIC22_13320) parC 1374069..1376540 (-) 2472 WP_218757601.1 DNA topoisomerase IV subunit A -
  ACLV7Q_RS06795 (SMIC22_13330) - 1377019..1377579 (-) 561 WP_218757602.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72779.44 Da        Isoelectric Point: 5.2075

>NTDB_id=1170048 ACLV7Q_RS06780 WP_218757599.1 1370922..1372889(-) (amiA3) [Streptococcus mitis isolate S. mitis C22]
MKSKKWILTTGLILSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDIIGNVVDGLMENDKYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNAPESFWNSKVTTATMLPVNEEFLKASGKNYGEVSPAGILYNGPYFLKTLTSKSLIEYEKNPNYWDK
ENVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEEYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEGQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPEKAKVAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLEDAVSETTDLE
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMRLQKDIVTTKEYDEALKKWQKEKL
ESNSKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170048 ACLV7Q_RS06780 WP_218757599.1 1370922..1372889(-) (amiA3) [Streptococcus mitis isolate S. mitis C22]
ATGAAATCGAAAAAGTGGATTTTAACAACAGGACTTATCCTAAGCACAACAGCTCTTTTAGCAGCCTGTGGAAAAGCTGA
TAAAGAAGCAGATGCTCCGACAACATTTTCTTATGTCTATGCAGTGGATCCAGCATCCTTGGACTACAGCATAGCAACGC
GTACATCCACAACAGATATTATCGGGAATGTCGTTGATGGTTTGATGGAAAATGATAAATATGGTAATGTTATTCCTTCT
TTGGCTGAGGATTGGTCTGTCTCAAAAGATGGATTGACTTATACCTATAAACTTCGTAAGGGAGTGAAATGGTACACATC
AGAAGGCGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTCGCTGATGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATTAAAGGCTTAGACGCCTACATGACTGGTGAAACCAATGATTTCTCTACAGTTGGT
GTTAAAGCTTTGGATGACTACACAGTTGAGTATACATTGAATGCGCCAGAAAGTTTCTGGAATTCAAAAGTGACCACAGC
GACGATGTTGCCTGTAAATGAAGAGTTTTTAAAGGCATCAGGAAAGAATTACGGAGAGGTTAGCCCAGCAGGTATTCTCT
ACAATGGTCCTTATTTCTTAAAAACATTGACTTCTAAATCGTTGATTGAATATGAAAAAAATCCAAATTACTGGGATAAA
GAAAATGTTAAAATTGAGAAGATTAAATTGACCTACTACGATGGTTCAGATCAGGAGTCTTTGATCCGTAGCTTCTCCTC
TGGTGCTTATACGACAGCCCGTCTCTTCCCAAGTAGTTCAAACTTTGCTTCAACTTTGGAAGAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGCAGTTATTACTTTACTTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGCGAAGGGCAAAAGACTTCTACAAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTTAACCG
TCATTCCTATGCTGCCCAGCTAAACGGTGAAGATGGTGCGGACAAGATTATTCGTAACAGCCTTGTTCCAGATAACTTCG
TACAAGCAGGTGGTAAGAACTTTGGTCAAATCGCCCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGAAAAGGCTAAAGTTGCTTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTCCCGGTTGAACAAACAGATACTATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCCATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTGCTTCAAATGACAGATAATGAAAAAGAA
ACGATTACATCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
TCCAGCGTCTTACTTGAATATTATGGATCCAAAATCTGGTTCTGCCATGAAACACCTTGGTATTACGAAAGGAAAAGATA
AGGATGTTGTCGCTAAACTTGGTTTGGATCAATATAAGAAATTGTTAGAAGATGCTGTTTCTGAGACCACTGACCTAGAG
AAGAGATATGAAAAATATGCCAAAGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCTTCATCTGGTGG
TTCTCCAGTTGTAAGTAACGTAGTACCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGGGATCCATATATCTTTA
AAGGAATGAGATTGCAAAAAGATATTGTTACAACAAAAGAATATGACGAAGCTCTTAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATAGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.424

100

0.528
  amiA3 Streptococcus thermophilus LMG 18311

51.818

100

0.522
  amiA Streptococcus salivarius strain HSISS4

51.824

100

0.521

Multiple sequence alignment