Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7Q_RS03560 Genome accession   NZ_OZ217341
Coordinates   686615..688573 (+) Length   652 a.a.
NCBI ID   WP_218757867.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 681615..693573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS03545 (SMIC22_06880) - 681839..683095 (-) 1257 WP_050213065.1 ISL3 family transposase -
  ACLV7Q_RS03550 (SMIC22_06890) - 683236..684681 (-) 1446 WP_218757865.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ACLV7Q_RS03555 (SMIC22_06900) - 684787..686409 (+) 1623 WP_218757866.1 putative polysaccharide biosynthesis protein -
  ACLV7Q_RS03560 (SMIC22_06910) amiA3 686615..688573 (+) 1959 WP_218757867.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS03565 (SMIC22_06920) - 688886..689341 (+) 456 WP_218757868.1 hypothetical protein -
  ACLV7Q_RS03570 - 689416..689565 (+) 150 WP_225904746.1 hypothetical protein -
  ACLV7Q_RS03575 (SMIC22_06930) - 689704..690798 (+) 1095 WP_020902227.1 cystathionine gamma-synthase -
  ACLV7Q_RS03580 (SMIC22_06940) - 690806..691972 (+) 1167 WP_218757869.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72395.88 Da        Isoelectric Point: 4.9425

>NTDB_id=1170036 ACLV7Q_RS03560 WP_218757867.1 686615..688573(+) (amiA3) [Streptococcus mitis isolate S. mitis C22]
MKKSKSKYLTLAGLVLGTGILLSACGNSSTGSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWSVSKDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGV
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYNGPFLMKALVSKSVIEYKKNPNYWDAK
NVLVDDVKLAYYDGSDQDALVRNFTDGAYSYARLYPNSSSYEGIKEKYKDNIIYSMQNATSYFLNFNLDRQSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNPEKAKAKFAEAKKELEAKGVTFPIHLDMTVDQANKKGVQEVSSMKQSIEAALGAENVVIDIQQLSTEDADN
TGYLAPTAAQKDYDLYNGGWSADYLDPSSYLDIFSVKNGGVLQNLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDPAKR
YEKYADVQAWLVDSSLAIPNVSLGGTPGLRKTVPFSAPYSLAGNKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170036 ACLV7Q_RS03560 WP_218757867.1 686615..688573(+) (amiA3) [Streptococcus mitis isolate S. mitis C22]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAATTTTATTGAGCGCGTGTGGAAA
TTCTAGCACAGGATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATACGGGAACTATGTGCCATCCTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAAGATTTTGTGACAGGTTTGAAATATGCGGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTCGCAGGCTTGGATGACTATATCACTGGGAAAACAAGCGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACGGTTCAATATACCTTGGCTAGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCTGCTAATATTTTGTACA
ATGGACCTTTCTTGATGAAAGCCCTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCGAAA
AATGTCCTTGTCGATGATGTCAAATTGGCCTATTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTACAGCTACGCTCGTCTCTATCCGAATAGTTCAAGTTATGAAGGGATTAAAGAAAAATACAAAGATAATATCATCT
ATAGTATGCAGAACGCTACGTCTTACTTCTTAAACTTTAATCTGGATAGACAATCTTATAAGTTTACTTCCAAGACAAGT
GATGCTGAAAAGAAATCAACTCAGGAAGCGGTTCTTAATAAAAACTTCCGTCAAGCCATTAACTTTGCCTATGACCGTAC
AGCCTACGGGGCTCAAACTCAGGGAGAAGACGGAGCGACTAAGATTTTACGTAATTTGGTTGTTCCTCCAACCTTTGTAA
GTATCAAAGGAAAAGACTTTGGTGAAGTAGTAGCTTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGTATCAACTTT
GCAGATGCCCAAGATCCATACTATAATCCAGAAAAAGCTAAGGCTAAGTTTGCGGAAGCTAAGAAAGAGCTAGAAGCCAA
GGGAGTAACCTTCCCTATCCACTTAGACATGACAGTTGACCAAGCTAATAAAAAAGGTGTTCAAGAAGTAAGCTCTATGA
AGCAATCTATTGAAGCAGCCTTAGGTGCAGAAAATGTTGTAATTGACATTCAACAACTCTCTACTGAAGACGCTGATAAT
ACAGGCTATTTGGCTCCGACTGCAGCCCAGAAAGATTACGATTTATACAATGGTGGTTGGAGCGCGGACTATCTCGATCC
ATCTAGCTATCTTGATATTTTTAGTGTCAAGAATGGTGGGGTTCTACAAAATCTTGGACTAGAGCCGGGTGAAGCCAATG
ACAAGGCCAAGGCGGTTGGACTGGATGTCTATACTCAAATGTTGGAAGAAGCTAATAAGGAGCAAGATCCGGCTAAACGT
TATGAGAAATATGCTGATGTTCAAGCTTGGTTGGTAGATAGTTCTCTAGCGATTCCAAATGTTTCATTGGGTGGAACACC
TGGCTTGAGAAAAACAGTTCCTTTCTCAGCACCTTATTCATTGGCTGGTAATAAAGGGGTTGAATCCTATAAATACCTCA
AAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

57.252

100

0.575
  amiA3 Streptococcus thermophilus LMD-9

57.252

100

0.575
  amiA Streptococcus salivarius strain HSISS4

57.339

100

0.575

Multiple sequence alignment