Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7Q_RS01340 Genome accession   NZ_OZ217341
Coordinates   242861..244825 (+) Length   654 a.a.
NCBI ID   WP_175880644.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 237861..249825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01315 (SMIC22_02490) - 238746..240134 (+) 1389 WP_218758085.1 Cof-type HAD-IIB family hydrolase -
  ACLV7Q_RS01320 (SMIC22_02500) - 240169..240621 (-) 453 WP_031223038.1 universal stress protein -
  ACLV7Q_RS01325 (SMIC22_02510) - 240783..241076 (+) 294 WP_218758084.1 hypothetical protein -
  ACLV7Q_RS01330 (SMIC22_02520) - 241230..242444 (+) 1215 WP_000666459.1 pyridoxal phosphate-dependent aminotransferase -
  ACLV7Q_RS01335 (SMIC22_02530) rpmH 242589..242723 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  ACLV7Q_RS01340 (SMIC22_02540) amiA 242861..244825 (+) 1965 WP_175880644.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72690.55 Da        Isoelectric Point: 4.5458

>NTDB_id=1170013 ACLV7Q_RS01340 WP_175880644.1 242861..244825(+) (amiA) [Streptococcus mitis isolate S. mitis C22]
MKKSKVMLFGAMALTAGLALAACGSSQSSNAEKTYSYVFTSNPDTLDYITSTRGSTSSITTNLIDGLLENDKYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGETSDFETVGV
KAVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSLARGFLEGNYSDGRIFPTSSVFNQLKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSLAAMQNKDFRQAVNFAFDRHAYAAQTNGEDGADRILRNTLIPSDFVQIGGKNFGDVVNEKIINYGTEWSNINL
NDAQPAFLNAEKAKAAFAKAKETLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGADNVVIDVTQLSPDEKDQ
ATFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPESGSQLNNIGLTAGKDNEVKEKIGLSAYKKLLDEADSEVENTQA
RYEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYVELQKEPVTAKQYQELYDKWLKEKAE
SNKKAQEDLASHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1170013 ACLV7Q_RS01340 WP_175880644.1 242861..244825(+) (amiA) [Streptococcus mitis isolate S. mitis C22]
ATGAAGAAATCAAAAGTTATGCTGTTTGGAGCTATGGCTCTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAAGCAACGCTGAGAAAACCTACTCTTATGTATTTACTAGTAATCCTGATACCTTGGACTACATTACGTCAACGCGTG
GCTCTACTTCAAGTATTACGACCAACTTGATTGATGGCTTGTTAGAAAATGATAAGTATGGTAATCTCATTCCATCTATG
GCTGAGTCATGGACGGTGTCAAAAGATGGTTTGACCTACACTTATAAAATCCGTCAGGGGGCGAAATGGTACACTTCAGA
GGGCGAAGAGTATGCGGATGTAACGGCTCATGACTTTGTGACAGGTCTCAAGTATGCAGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTCCAAGACTCTATCAAGGGCCTCGCAGACTACGTTGAGGGGGAAACATCTGACTTTGAGACTGTTGGAGTT
AAGGCAGTGGATGACTATACTCTTCAATATACTTTGAATAAGCCGGAATCTTACTGGAATTCTAAGACTACTGGGGGCAT
TTTGAGTCCGGTAAATGAGGCTTTTTTGAAATCTAAAGGAGATGACTTTGGTAGTGTAACACCATCCAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAATTTGATAAAAACCCTAATTATTGGGACAAGGAT
AATGTGAAAATTGAGAAAGTGAAGCTCTCTTTCTTTGACGGTTCTGACCAAGATAGTTTGGCGAGAGGATTTTTGGAAGG
GAACTACTCGGACGGTCGTATCTTCCCGACAAGTTCAGTGTTTAATCAGTTGAAAAAAGGGAATGAGGACAAGATTACCT
ATACACCGCAAAACTCAGTTACTTTCTATTATCTTTTCAACGTGAATCGTCAAAGCTACAAGCAGACCATGAAACAGTCT
GATAAGGAAAAGACAGATTCACTTGCAGCCATGCAAAATAAGGATTTCCGTCAGGCTGTCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACGCTTATCCCAAGTGACTTTGTCC
AAATCGGTGGTAAAAACTTTGGAGATGTTGTCAATGAAAAGATTATTAACTATGGTACAGAGTGGTCGAATATCAATTTG
AATGATGCGCAACCTGCCTTTTTGAATGCTGAAAAAGCCAAGGCAGCATTTGCTAAAGCTAAAGAAACCTTGCAAGCAGA
AGGCGTGACCTTTCCAATTCATTTGGATATGCCAGTTGACCAGACGGCCAAGTTAGATGTGCAACAAGCAAGTTCCTTTA
AGCAGACAGTGGAAGAAACCCTTGGGGCAGACAACGTTGTGATTGATGTGACTCAACTTTCTCCAGACGAGAAGGATCAA
GCTACATTCTTTGCAGATACAGCTGAACAAAAGGACTATGACATTGATATTTCAGGTTGGAGCGGAGATTACTCAGATCC
GAAAACTTATCTTGATCTCTTGGATCCAGAGTCAGGTTCTCAGCTTAACAATATTGGTTTGACTGCTGGAAAAGATAATG
AAGTAAAAGAAAAAATTGGACTTTCTGCTTATAAGAAGTTACTAGATGAAGCAGATAGCGAAGTTGAAAATACTCAGGCT
CGTTATGAAAAATTTGCTGAAGTACAAGCTTGGTTGACTGACAGCGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCCAA
CCCAATCTTCCGTAAGACTGTACCGTTTACAGGAGCTTTCTCTTTCGTTGGTCATAAGGGAGATGCTGATAACTACAAAT
ATGTTGAACTGCAAAAAGAGCCGGTCACTGCGAAACAGTACCAGGAACTCTATGATAAATGGCTAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTGGCTAGCCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.711

100

0.55

Multiple sequence alignment