Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7H_RS08310 Genome accession   NZ_OZ217340
Coordinates   1620664..1622646 (-) Length   660 a.a.
NCBI ID   WP_411866904.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615664..1627646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS08295 (SORA22_16710) recU 1615791..1616387 (+) 597 WP_411866902.1 Holliday junction resolvase RecU -
  ACLV7H_RS08300 (SORA22_16720) pbp1a 1616384..1618549 (+) 2166 WP_411866903.1 penicillin-binding protein PBP1A -
  ACLV7H_RS08305 - 1619012..1620282 (-) 1271 Protein_1586 IS3 family transposase -
  ACLV7H_RS08310 (SORA22_16740) amiA3 1620664..1622646 (-) 1983 WP_411866904.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS08315 (SORA22_16750) rfbD 1622884..1623738 (+) 855 WP_411866905.1 dTDP-4-dehydrorhamnose reductase -
  ACLV7H_RS08320 (SORA22_16760) rfbB 1623799..1624845 (-) 1047 WP_411866906.1 dTDP-glucose 4,6-dehydratase -
  ACLV7H_RS08325 (SORA22_16770) - 1624864..1625457 (-) 594 WP_411866907.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  ACLV7H_RS08330 (SORA22_16780) rfbA 1625458..1626327 (-) 870 WP_411866908.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ACLV7H_RS08335 (SORA22_16790) - 1626399..1627451 (-) 1053 WP_411866909.1 galactofuranosyltransferase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73433.79 Da        Isoelectric Point: 4.6734

>NTDB_id=1169977 ACLV7H_RS08310 WP_411866904.1 1620664..1622646(-) (amiA3) [Streptococcus oralis isolate S. oralis A22]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFLTGLKYAADKKSDGLYLVQESIKGLDAYVKGETKDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYTETEKTFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSKV
NLDDAQDGLYSPDKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKHVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTTEEYQKAQEKW
LKEKEESNKKAQENLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1169977 ACLV7H_RS08310 WP_411866904.1 1620664..1622646(-) (amiA3) [Streptococcus oralis isolate S. oralis A22]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCGACTCTTGCGGCCTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCGAATATTACTAGCAACGTTATTGATGGCTTGCTCGAAAATGACCGCTATGGGAACTTTGTACCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCGAAATGGTATACATC
TGAAGGTGAGGAATATGCAGAAGTTAAAGCTCAAGACTTTTTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTACCTGGTTCAGGAATCTATCAAGGGATTAGATGCCTATGTTAAAGGAGAAACTAAAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTTTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAGTTTTTGAACTCTAAAGGGGATGATTTTGCTAAAGGTACGGACCCAAGCAGTATTC
TCTATAATGGCCCATTCTTACTCAAATCAATCGTAGCAAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTTCATCTTGACAAAGTGAAATTATCCTTCTGGGATGGTCAAGATACCAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGTCTCTTCCCAACAAGTGCTAGTTACACAGAGACTGAAAAAACATTCAAAGACAATA
TCGTTTATACCCAACAAGATTCTACTACTTATTTAGTGGGCACAAATATCGATCGTCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAACATCAACCAAGAAGGCCCTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
CAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAACTTATTTGTTCCTCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAGGAAAAATTGGTGACCTATGGAGACGAGTGGAGCAAGGTA
AACTTGGATGATGCTCAAGATGGACTCTACAGTCCTGACAAAGCCAAAGCAGAATTCGCTAAAGCTAAGACAGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGACATCCAACAGCTCCAAAAAGATGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAATACGAAAACATATTTAGGATTTGATTCTG
GGACAAACAATGCTGCAGCTAAGCATGTTGGTTTAGAAGATTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACTACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATTCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCATTTGCATATTCTGGTAACAAGGGTATGAGCG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAAGCCGTGACAACAGAAGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCTCAAGAAAATCTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.909

100

0.6
  amiA Streptococcus salivarius strain HSISS4

59.455

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

59.304

100

0.594

Multiple sequence alignment