Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A412_RS12125 Genome accession   NZ_CP007171
Coordinates   2382934..2383416 (-) Length   160 a.a.
NCBI ID   WP_003722552.1    Uniprot ID   A0A3T2EU60
Organism   Listeria monocytogenes serotype 1/2a str. 10-0813     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2377934..2388416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A412_RS12085 (A412_2370) - 2378035..2379345 (-) 1311 WP_088819443.1 PBSX family phage terminase large subunit -
  A412_RS12090 (A412_2371) - 2379338..2380093 (-) 756 WP_003722545.1 terminase small subunit -
  A412_RS12095 (A412_2372) - 2380177..2380887 (-) 711 WP_003722546.1 hypothetical protein -
  A412_RS12100 (A412_2373) - 2381124..2381696 (-) 573 WP_003722547.1 sigma-70 family RNA polymerase sigma factor -
  A412_RS12105 (A412_2374) - 2381784..2381939 (-) 156 WP_003722548.1 hypothetical protein -
  A412_RS12110 (A412_2375) - 2381958..2382371 (-) 414 WP_003722549.1 DUF2481 family protein -
  A412_RS12115 (A412_2376) - 2382375..2382779 (-) 405 WP_003722550.1 DUF1064 domain-containing protein -
  A412_RS12120 - 2382724..2382915 (-) 192 WP_003722551.1 hypothetical protein -
  A412_RS12125 (A412_2377) ssbA 2382934..2383416 (-) 483 WP_003722552.1 single-stranded DNA-binding protein Machinery gene
  A412_RS12130 (A412_2378) - 2383413..2383592 (-) 180 WP_003733878.1 hypothetical protein -
  A412_RS12135 (A412_2379) - 2383696..2383863 (-) 168 WP_003722554.1 hypothetical protein -
  A412_RS12140 (A412_2380) - 2383860..2384321 (-) 462 WP_003722555.1 hypothetical protein -
  A412_RS12145 (A412_2381) - 2384318..2384788 (-) 471 WP_003722556.1 pentapeptide repeat-containing protein -
  A412_RS12150 (A412_2382) - 2384785..2385228 (-) 444 WP_003722557.1 YopX family protein -
  A412_RS12155 - 2385225..2385422 (-) 198 WP_003722558.1 hypothetical protein -
  A412_RS12160 (A412_2383) - 2385425..2386021 (-) 597 WP_003722559.1 DUF1642 domain-containing protein -
  A412_RS12165 (A412_2384) - 2386018..2386830 (-) 813 WP_003722560.1 DNA adenine methylase -
  A412_RS12170 (A412_2385) - 2386827..2387771 (-) 945 WP_003722561.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17837.65 Da        Isoelectric Point: 4.9909

>NTDB_id=116961 A412_RS12125 WP_003722552.1 2382934..2383416(-) (ssbA) [Listeria monocytogenes serotype 1/2a str. 10-0813]
MMNRVVLVGRLTKDPDLRYTPAGVAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQKSDSFASEGKPIDINEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=116961 A412_RS12125 WP_003722552.1 2382934..2383416(-) (ssbA) [Listeria monocytogenes serotype 1/2a str. 10-0813]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCAGTAAATCGTACATTCACTAATCAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGCAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
TAACAACGTAGAAGGTGCTACATCGAATAATTACCAAAACAAGGCTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGTCAGAAGAGCGATTCATTTGCAAGTGAAGGTAAGCCGATTGATATTAACGAAGACGATTTGCCGTTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T2EU60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.7
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

66.25

0.419

Multiple sequence alignment