Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUEH_RS06985 Genome accession   NZ_OZ197095
Coordinates   1458043..1458453 (+) Length   136 a.a.
NCBI ID   WP_005112082.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453043..1463453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS06970 - 1454032..1456338 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  ACNUEH_RS06975 - 1456383..1457156 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  ACNUEH_RS06980 mazG 1457268..1458074 (+) 807 WP_272296691.1 nucleoside triphosphate pyrophosphohydrolase -
  ACNUEH_RS06985 comEA 1458043..1458453 (+) 411 WP_005112082.1 ComEA family DNA-binding protein Machinery gene
  ACNUEH_RS06990 pcnB 1458578..1460041 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ACNUEH_RS06995 folK 1460038..1460520 (+) 483 WP_272296692.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACNUEH_RS07000 panB 1460566..1461375 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACNUEH_RS07005 panC 1461379..1462227 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ACNUEH_RS07010 rapZ 1462250..1463101 (+) 852 WP_000821671.1 RNase adapter RapZ -
  ACNUEH_RS07015 - 1463098..1463367 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.94 Da        Isoelectric Point: 10.4475

>NTDB_id=1169451 ACNUEH_RS06985 WP_005112082.1 1458043..1458453(+) (comEA) [Acinetobacter baumannii isolate 23S01404-6]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1169451 ACNUEH_RS06985 WP_005112082.1 1458043..1458453(+) (comEA) [Acinetobacter baumannii isolate 23S01404-6]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment