Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACNUEH_RS02290 Genome accession   NZ_OZ197095
Coordinates   472242..472769 (-) Length   175 a.a.
NCBI ID   WP_024436689.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467242..477769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS02270 - 467431..468306 (-) 876 WP_000218798.1 hypothetical protein -
  ACNUEH_RS02275 aroB 468322..469404 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ACNUEH_RS02280 aroK 469433..470002 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACNUEH_RS02285 pilQ 470014..472179 (-) 2166 WP_416632294.1 type IV pilus secretin PilQ Machinery gene
  ACNUEH_RS02290 pilP 472242..472769 (-) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  ACNUEH_RS02295 pilO 472780..473520 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNUEH_RS02300 pilN 473517..474158 (-) 642 WP_416632295.1 PilN domain-containing protein Machinery gene
  ACNUEH_RS02305 pilM 474158..475216 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19433.66 Da        Isoelectric Point: 8.9898

>NTDB_id=1169429 ACNUEH_RS02290 WP_024436689.1 472242..472769(-) (pilP) [Acinetobacter baumannii isolate 23S01404-6]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1169429 ACNUEH_RS02290 WP_024436689.1 472242..472769(-) (pilP) [Acinetobacter baumannii isolate 23S01404-6]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment