Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACNUEH_RS02300 Genome accession   NZ_OZ197095
Coordinates   473517..474158 (-) Length   213 a.a.
NCBI ID   WP_416632295.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate 23S01404-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468517..479158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEH_RS02280 aroK 469433..470002 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACNUEH_RS02285 pilQ 470014..472179 (-) 2166 WP_416632294.1 type IV pilus secretin PilQ Machinery gene
  ACNUEH_RS02290 pilP 472242..472769 (-) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  ACNUEH_RS02295 pilO 472780..473520 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACNUEH_RS02300 pilN 473517..474158 (-) 642 WP_416632295.1 PilN domain-containing protein Machinery gene
  ACNUEH_RS02305 pilM 474158..475216 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACNUEH_RS02310 ponA 475378..477933 (+) 2556 WP_416632296.1 penicillin-binding protein PBP1a -
  ACNUEH_RS02315 - 477951..478775 (-) 825 WP_153904635.1 putative RNA methyltransferase -
  ACNUEH_RS02320 - 478778..479110 (-) 333 WP_000598371.1 DUF7709 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24026.43 Da        Isoelectric Point: 5.8666

>NTDB_id=1169431 ACNUEH_RS02300 WP_416632295.1 473517..474158(-) (pilN) [Acinetobacter baumannii isolate 23S01404-6]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKKLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1169431 ACNUEH_RS02300 WP_416632295.1 473517..474158(-) (pilN) [Acinetobacter baumannii isolate 23S01404-6]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAAAATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTGGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment