Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUEB_RS02335 Genome accession   NZ_OZ197089
Coordinates   424266..424952 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00080-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419266..429952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEB_RS02300 yqeH 419793..420893 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUEB_RS02305 aroE 420907..421713 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUEB_RS02310 yhbY 421717..422007 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUEB_RS02315 nadD 422010..422579 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUEB_RS02320 yqeK 422569..423153 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUEB_RS02325 rsfS 423154..423507 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUEB_RS02330 - 423510..424226 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUEB_RS02335 comEA 424266..424952 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUEB_RS02340 - 425044..425505 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUEB_RS02345 comEC 425510..427711 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUEB_RS02350 holA 427768..428742 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUEB_RS02355 rpsT 428787..429038 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1169178 ACNUEB_RS02335 WP_001825349.1 424266..424952(+) (comEA) [Staphylococcus aureus isolate 23S00080-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1169178 ACNUEB_RS02335 WP_001825349.1 424266..424952(+) (comEA) [Staphylococcus aureus isolate 23S00080-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment