Detailed information NTG0116881

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: A410_RS12385
• Genome accession: NZ_CP007169
• Coordinates: 2457581..2458063 (-)
• Length: 160 a.a.
• NCBI ID: WP_088813818.1
• Uniprot ID: -
• Organism: Listeria monocytogenes serotype 1/2b str. 10-0811
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2452581..2463063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A410_RS12340 (A410_2451)	-	2453014..2454345 (-)	1332	WP_010990214.1	PBSX family phage terminase large subunit	-
A410_RS12345 (A410_2452)	-	2454314..2454856 (-)	543	WP_010990213.1	terminase small subunit	-
A410_RS12350 (A410_2453)	-	2454914..2455177 (-)	264	WP_010990212.1	DUF6275 family protein	-
A410_RS12355 (A410_2454)	-	2455204..2455503 (-)	300	WP_009911405.1	phage protein	-
A410_RS12360 (A410_2455)	-	2455898..2456332 (-)	435	WP_003735131.1	ArpU family phage packaging/lysis transcriptional regulator	-
A410_RS12365 (A410_2456)	-	2456351..2456515 (-)	165	WP_015967177.1	hypothetical protein	-
A410_RS12370 (A410_2458)	-	2456644..2457027 (-)	384	WP_088813814.1	DUF2481 family protein	-
A410_RS12375 (A410_2459)	-	2457031..2457435 (-)	405	WP_088813815.1	DUF1064 domain-containing protein	-
A410_RS12380	-	2457380..2457562 (-)	183	WP_088813817.1	hypothetical protein	-
A410_RS12385 (A410_2460)	ssbA	2457581..2458063 (-)	483	WP_088813818.1	single-stranded DNA-binding protein	Machinery gene
A410_RS15535	-	2458060..2458560 (-)	501	Protein_2402	hypothetical protein	-
A410_RS12395 (A410_2462)	-	2458557..2458835 (-)	279	WP_070243068.1	DUF1642 domain-containing protein	-
A410_RS12400 (A410_2463)	-	2458847..2459074 (-)	228	WP_070210907.1	ASCH/PUA domain-containing protein	-
A410_RS12405 (A410_2464)	-	2459096..2459479 (-)	384	WP_070243069.1	hypothetical protein	-
A410_RS12410 (A410_2465)	-	2459476..2460000 (-)	525	WP_088813819.1	YopX family protein	-
A410_RS12415 (A410_2466)	-	2459997..2460545 (-)	549	WP_031670092.1	DUF1642 domain-containing protein	-
A410_RS12420 (A410_2467)	-	2460542..2461222 (-)	681	WP_023548471.1	hypothetical protein	-
A410_RS12425 (A410_2468)	-	2461235..2462179 (-)	945	WP_031644274.1	site-specific integrase	-
A410_RS12430 (A410_2469)	-	2462190..2462903 (-)	714	WP_031690742.1	N-6 DNA methylase	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 17811.66 Da
• Isoelectric Point: 5.2853

>NTDB_id=116881 A410_RS12385 WP_088813818.1 2457581..2458063(-) (ssbA) [Listeria monocytogenes serotype 1/2b str. 10-0811]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQNRDSFANEGKPIDINPDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=116881 A410_RS12385 WP_088813818.1 2457581..2458063(-) (ssbA) [Listeria monocytogenes serotype 1/2b str. 10-0811]
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCAGATTTACGTTACACTCCGGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
TAACAACGTAGAAGGTGCTACATCGAATAATTACCAAAACAAGGCTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAATAGAGATTCATTTGCGAATGAAGGTAAGCCGATTGATATTAATCCGGATGATTTACCATTT
TGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.535	100	0.694
ssb	Latilactobacillus sakei subsp. sakei 23K	55.294	100	0.587
ssbB	Bacillus subtilis subsp. subtilis str. 168	66.038	66.25	0.438