Detailed information NTG0116817

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: A409_RS03360
• Genome accession: NZ_CP007168
• Coordinates: 690106..690585 (+)
• Length: 159 a.a.
• NCBI ID: WP_012951314.1
• Uniprot ID: A0A3A7SS43
• Organism: Listeria monocytogenes serotype 1/2b str. 10-0810
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 685106..695585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A409_RS15395	-	685118..685294 (+)	177	WP_012951305.1	hypothetical protein	-
A409_RS03315 (A409_0657)	-	685308..685832 (+)	525	WP_012951306.1	hypothetical protein	-
A409_RS03320 (A409_0658)	-	685841..686305 (+)	465	WP_012951307.1	class I SAM-dependent methyltransferase	-
A409_RS03325 (A409_0659)	-	686302..687015 (+)	714	WP_012951308.1	N-6 DNA methylase	-
A409_RS03330 (A409_0660)	-	687026..687970 (+)	945	WP_012951309.1	site-specific integrase	-
A409_RS03335 (A409_0661)	-	687983..688663 (+)	681	WP_003762551.1	hypothetical protein	-
A409_RS03340 (A409_0662)	-	688660..688875 (+)	216	WP_012951310.1	hypothetical protein	-
A409_RS03345 (A409_0663)	-	688872..689255 (+)	384	WP_012951311.1	hypothetical protein	-
A409_RS03350 (A409_0664)	-	689277..689525 (+)	249	WP_012951312.1	ASCH/PUA domain-containing protein	-
A409_RS03355 (A409_0665)	-	689525..690106 (+)	582	WP_012951313.1	DUF3310 domain-containing protein	-
A409_RS03360 (A409_0666)	ssbA	690106..690585 (+)	480	WP_012951314.1	single-stranded DNA-binding protein	Machinery gene
A409_RS03365	-	690654..690830 (+)	177	WP_223196704.1	hypothetical protein	-
A409_RS03370 (A409_0667)	-	690891..691409 (+)	519	WP_012951316.1	sigma factor-like helix-turn-helix DNA-binding protein	-
A409_RS03375 (A409_0668)	-	691406..691948 (+)	543	WP_012951317.1	tyrosine-type recombinase/integrase	-
A409_RS03380 (A409_0669)	-	692230..692457 (+)	228	WP_012951318.1	hypothetical protein	-
A409_RS03385 (A409_0670)	-	692435..692758 (+)	324	WP_371079501.1	hypothetical protein	-
A409_RS03390	-	692755..693117 (+)	363	WP_049961585.1	HNH endonuclease signature motif containing protein	-
A409_RS03395 (A409_0671)	-	693212..693739 (+)	528	WP_012951321.1	phage terminase small subunit P27 family	-
A409_RS03400 (A409_0672)	-	693732..695459 (+)	1728	WP_023552288.1	terminase large subunit	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17489.37 Da
• Isoelectric Point: 4.9719

>NTDB_id=116817 A409_RS03360 WP_012951314.1 690106..690585(+) (ssbA) [Listeria monocytogenes serotype 1/2b str. 10-0810]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNPGRATTNDYQSKANYSNNAQTSSYESGASQKDGAFVSDSKPIDISDDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=116817 A409_RS03360 WP_012951314.1 690106..690585(+) (ssbA) [Listeria monocytogenes serotype 1/2b str. 10-0810]
ATGATGAATCGTGTAGTACTTGTAGGTCGATTAACTAAAGACCCTGATTTACGATATACGCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGAAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGTCGAATACAGACTCGA
AATTATGAGGACAACGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
CAACCCAGGGAGAGCTACAACGAATGATTATCAAAGCAAAGCTAATTATTCAAACAACGCTCAAACAAGCTCATATGAAT
CGGGTGCGAGCCAGAAAGACGGTGCGTTTGTTAGTGATAGCAAGCCAATCGATATTTCAGATGATGATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A3A7SS43

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.692
ssb	Latilactobacillus sakei subsp. sakei 23K	54.286	100	0.597
ssbB	Bacillus subtilis subsp. subtilis str. 168	66.981	66.667	0.447