Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   ACFCTL_RS05165 Genome accession   NZ_OZ182546
Coordinates   1110091..1110675 (+) Length   194 a.a.
NCBI ID   WP_013101268.1    Uniprot ID   A0A378K473
Organism   Legionella pneumophila isolate ZIB8567     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1105091..1115675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS05145 - 1106441..1107448 (-) 1008 WP_013101264.1 hypothetical protein -
  ACFCTL_RS05150 pilM 1107865..1108929 (+) 1065 WP_013101265.1 type IV pilus assembly protein PilM Machinery gene
  ACFCTL_RS05155 pilN 1108933..1109481 (+) 549 WP_013101266.1 PilN domain-containing protein Machinery gene
  ACFCTL_RS05160 pilO 1109495..1110094 (+) 600 WP_013101267.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFCTL_RS05165 pilP 1110091..1110675 (+) 585 WP_013101268.1 pilus assembly protein PilP Machinery gene
  ACFCTL_RS05170 pilQ 1110679..1112775 (+) 2097 WP_011946023.1 type IV pilus secretin PilQ Machinery gene
  ACFCTL_RS05175 aroK 1113222..1113749 (+) 528 WP_010946667.1 shikimate kinase AroK -
  ACFCTL_RS05180 aroB 1113736..1114845 (+) 1110 WP_013101269.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 194 a.a.        Molecular weight: 22026.56 Da        Isoelectric Point: 10.4471

>NTDB_id=1167977 ACFCTL_RS05165 WP_013101268.1 1110091..1110675(+) (pilP) [Legionella pneumophila isolate ZIB8567]
MIIKNNQTLILGFFGNSLRVSLTAATFRKSLLTGLLVLLLSACSGDSSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRIV
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1167977 ACFCTL_RS05165 WP_013101268.1 1110091..1110675(+) (pilP) [Legionella pneumophila isolate ZIB8567]
ATGATAATTAAAAACAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGTGTTTCACTCACAGCAGCGACTTT
CCGAAAAAGTCTATTGACGGGGTTATTGGTACTATTACTTAGTGCCTGCTCTGGTGATAGCAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAGCAACCTGACGGTCAGATTAGCCGTGTGAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATTGTT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTAA

Domains


Predicted by InterproScan.

(49-188)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A378K473

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

94.33

100

0.943


Multiple sequence alignment