Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFCTL_RS04550 Genome accession   NZ_OZ182546
Coordinates   993141..993458 (+) Length   105 a.a.
NCBI ID   WP_027220896.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 988141..998458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS04530 - 988293..989732 (+) 1440 WP_027220894.1 cation:proton antiporter -
  ACFCTL_RS04535 nadC 989729..990571 (+) 843 WP_013101201.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACFCTL_RS04540 - 990568..991659 (+) 1092 WP_010946544.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  ACFCTL_RS04545 - 991634..993049 (+) 1416 WP_027220895.1 M20 family metallopeptidase -
  ACFCTL_RS04550 comEA 993141..993458 (+) 318 WP_027220896.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACFCTL_RS04555 - 993654..994691 (+) 1038 WP_011213320.1 rod shape-determining protein -
  ACFCTL_RS04560 mreC 994669..995577 (+) 909 WP_010946548.1 rod shape-determining protein MreC -
  ACFCTL_RS04565 mreD 995574..996053 (+) 480 WP_027220897.1 rod shape-determining protein MreD -
  ACFCTL_RS04570 - 995989..996591 (-) 603 WP_027220898.1 pseudouridine synthase -
  ACFCTL_RS04575 - 996852..997550 (+) 699 WP_027220899.1 hypothetical protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11739.76 Da        Isoelectric Point: 10.5233

>NTDB_id=1167973 ACFCTL_RS04550 WP_027220896.1 993141..993458(+) (comEA) [Legionella pneumophila isolate ZIB8567]
MKARLIAILLSIIVIPFSSQAENEPQKTPAKQVLVKGKINLNTADVYSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEIFVIN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1167973 ACFCTL_RS04550 WP_027220896.1 993141..993458(+) (comEA) [Legionella pneumophila isolate ZIB8567]
ATGAAAGCAAGACTCATTGCTATTTTGTTGTCAATTATAGTTATCCCTTTCTCTTCTCAAGCTGAGAACGAGCCTCAAAA
AACTCCAGCTAAACAAGTCCTTGTTAAGGGCAAGATTAATCTTAATACAGCGGATGTGTATTCTTTAACAGGCTCTTTTA
AAGGGATAGGAAAAAAACGGGCTGAAGCTATTATTGCTTATAGAGAGAATCATCAAGGGTTTAAATCTCTGGAAGAGCTT
GCGGAAGTCAAGGGTATAGGGCAGCGTTTTGTAGATAAAAATAGAGAAAAACTGAAAGAAATTTTCGTTATTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

99.048

100

0.99
  comEA Legionella pneumophila strain ERS1305867

99.048

100

0.99
  comEA Staphylococcus aureus N315

38.384

94.286

0.362
  comEA Staphylococcus aureus MW2

38.384

94.286

0.362

Multiple sequence alignment