Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   ACFCTL_RS03690 Genome accession   NZ_OZ182546
Coordinates   759615..760064 (-) Length   149 a.a.
NCBI ID   WP_027220488.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 754615..765064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS03670 - 754889..755281 (-) 393 WP_011214843.1 hypothetical protein -
  ACFCTL_RS03675 - 755418..755795 (+) 378 WP_027220485.1 hypothetical protein -
  ACFCTL_RS03680 - 755997..757304 (+) 1308 WP_027220486.1 tetratricopeptide repeat protein -
  ACFCTL_RS03685 comEC 757330..759537 (-) 2208 WP_027220487.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFCTL_RS03690 pilE 759615..760064 (-) 450 WP_027220488.1 type IV pilin protein Machinery gene
  ACFCTL_RS03695 - 760076..763585 (-) 3510 WP_027220489.1 pilus assembly protein -
  ACFCTL_RS03700 - 763598..764110 (-) 513 WP_027220490.1 pilus assembly protein -

Sequence


Protein


Download         Length: 149 a.a.        Molecular weight: 16347.65 Da        Isoelectric Point: 8.1177

>NTDB_id=1167971 ACFCTL_RS03690 WP_027220488.1 759615..760064(-) (pilE) [Legionella pneumophila isolate ZIB8567]
MLSHVHFMKNRRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASLSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1167971 ACFCTL_RS03690 WP_027220488.1 759615..760064(-) (pilE) [Legionella pneumophila isolate ZIB8567]
ATGCTCAGTCATGTACATTTTATGAAGAATCGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGCATTCTAGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCAGCGTGTGGCGCC
CTACCAGCATTTCCTCAAACAACGCCGAACGGGTACTATACTATCAATATTTCAAACCTGACGGCCACAACGTATACCTT
AACCGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCCTGTCAATTAATCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCCGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

98.658

100

0.987

  pilE Legionella pneumophila strain ERS1305867

98.658

100

0.987


Multiple sequence alignment