Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A408_RS00610 Genome accession   NZ_CP007167
Coordinates   106700..107182 (+) Length   160 a.a.
NCBI ID   WP_023546281.1    Uniprot ID   -
Organism   Listeria monocytogenes serotype 4b str. 10-0809     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 101700..112182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A408_RS00565 (A408_0113) - 102412..103326 (+) 915 WP_023546298.1 DnaD domain-containing protein -
  A408_RS00570 (A408_0114) - 103374..103904 (+) 531 WP_041197739.1 hypothetical protein -
  A408_RS15170 (A408_0115) - 103915..104082 (+) 168 WP_023546294.1 hypothetical protein -
  A408_RS00575 (A408_0116) - 104088..104366 (+) 279 WP_041197735.1 hypothetical protein -
  A408_RS00580 (A408_0117) - 104363..104593 (+) 231 WP_023546290.1 hypothetical protein -
  A408_RS00585 (A408_0118) - 104596..105165 (+) 570 WP_023546288.1 DUF1642 domain-containing protein -
  A408_RS00590 (A408_0119) - 105162..105350 (+) 189 WP_023546287.1 hypothetical protein -
  A408_RS15140 - 105347..105523 (+) 177 WP_015987084.1 hypothetical protein -
  A408_RS00595 (A408_0120) - 105510..105800 (+) 291 Protein_122 YopX family protein -
  A408_RS15175 (A408_0121) - 105897..106067 (+) 171 WP_023546284.1 hypothetical protein -
  A408_RS00600 (A408_0122) - 106067..106351 (+) 285 WP_023546283.1 DUF7446 family protein -
  A408_RS00605 (A408_0123) - 106348..106620 (+) 273 WP_023546282.1 hypothetical protein -
  A408_RS00610 (A408_0124) ssbA 106700..107182 (+) 483 WP_023546281.1 single-stranded DNA-binding protein Machinery gene
  A408_RS00615 - 107201..107383 (+) 183 WP_023546280.1 hypothetical protein -
  A408_RS00620 (A408_0125) - 107328..107732 (+) 405 WP_041197734.1 DUF1064 domain-containing protein -
  A408_RS00625 (A408_0126) - 107736..108122 (+) 387 WP_023546277.1 DUF2481 family protein -
  A408_RS00630 (A408_0127) - 108143..108298 (+) 156 WP_023546275.1 hypothetical protein -
  A408_RS00635 (A408_0128) - 108386..108958 (+) 573 WP_023546273.1 sigma-70 family RNA polymerase sigma factor -
  A408_RS00640 (A408_0129) - 109169..109912 (+) 744 WP_232463304.1 hypothetical protein -
  A408_RS00645 (A408_0130) - 109978..110520 (+) 543 WP_023546270.1 terminase small subunit -
  A408_RS00650 (A408_0131) - 110489..111820 (+) 1332 WP_023546268.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17930.73 Da        Isoelectric Point: 4.8280

>NTDB_id=116768 A408_RS00610 WP_023546281.1 106700..107182(+) (ssbA) [Listeria monocytogenes serotype 4b str. 10-0809]
MMNRVVLVGRLTKDPELRYTPASVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAETVQFLEPKNNNAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFASEGKPFDINEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=116768 A408_RS00610 WP_023546281.1 106700..107182(+) (ssbA) [Listeria monocytogenes serotype 4b str. 10-0809]
ATGATGAATCGTGTAGTGCTTGTAGGACGATTAACTAAAGACCCTGAATTACGTTACACTCCAGCTAGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCAGGCGTTGATGGACGCATACAGACTCGA
AATTATGAAGATAACGACGGTAAACGTGTTTTTGTTACTGAAGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TAACAATGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCAAGTGAAGGTAAGCCGTTTGATATTAACGAAGATGATTTGCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.681
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

66.25

0.412

Multiple sequence alignment