Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AW02_RS12305 Genome accession   NZ_CP007165
Coordinates   2607221..2607556 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis NJN-6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2602221..2612556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW02_RS12285 (AW02_024450) gcvT 2602832..2603932 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  AW02_RS12290 (AW02_024460) - 2604355..2606025 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  AW02_RS12295 (AW02_024470) - 2606043..2606837 (+) 795 WP_003153106.1 YqhG family protein -
  AW02_RS12300 (AW02_024480) sinI 2607014..2607187 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AW02_RS12305 (AW02_024490) sinR 2607221..2607556 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AW02_RS12310 (AW02_024500) tasA 2607604..2608389 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  AW02_RS12315 (AW02_024510) sipW 2608453..2609037 (-) 585 WP_003153100.1 signal peptidase I SipW -
  AW02_RS12320 (AW02_024520) tapA 2609009..2609680 (-) 672 WP_046341384.1 amyloid fiber anchoring/assembly protein TapA -
  AW02_RS12325 (AW02_024530) - 2609939..2610268 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  AW02_RS12330 (AW02_024540) - 2610308..2610487 (-) 180 WP_003153093.1 YqzE family protein -
  AW02_RS12335 (AW02_024550) comGG 2610544..2610921 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  AW02_RS12340 (AW02_024560) comGF 2610922..2611317 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  AW02_RS12345 (AW02_024570) comGE 2611331..2611645 (-) 315 WP_046341385.1 competence type IV pilus minor pilin ComGE -
  AW02_RS12350 (AW02_024580) comGD 2611629..2612066 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  AW02_RS12355 (AW02_024590) comGC 2612056..2612322 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=116714 AW02_RS12305 WP_003153104.1 2607221..2607556(+) (sinR) [Bacillus velezensis NJN-6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=116714 AW02_RS12305 WP_003153104.1 2607221..2607556(+) (sinR) [Bacillus velezensis NJN-6]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment