Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3212_RS05700 Genome accession   NZ_OZ061592
Coordinates   1154579..1155130 (+) Length   183 a.a.
NCBI ID   WP_367365193.1    Uniprot ID   -
Organism   Pediococcus parvulus isolate Pediococcus parvulus CIRM-BIA2501     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1149579..1160130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3212_RS05690 gyrA 1151514..1154054 (+) 2541 WP_260267503.1 DNA gyrase subunit A -
  AB3212_RS05695 rpsF 1154248..1154538 (+) 291 WP_057784114.1 30S ribosomal protein S6 -
  AB3212_RS05700 ssb 1154579..1155130 (+) 552 WP_367365193.1 single-stranded DNA-binding protein Machinery gene
  AB3212_RS05705 rpsR 1155152..1155391 (+) 240 WP_057784110.1 30S ribosomal protein S18 -
  AB3212_RS05710 - 1155642..1156322 (+) 681 WP_367365194.1 EAL domain-containing protein -
  AB3212_RS05715 - 1156353..1157714 (+) 1362 WP_260267505.1 FAD-dependent oxidoreductase -
  AB3212_RS05720 - 1157882..1159069 (-) 1188 WP_068805313.1 MFS transporter -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19886.29 Da        Isoelectric Point: 4.5070

>NTDB_id=1166355 AB3212_RS05700 WP_367365193.1 1154579..1155130(+) (ssb) [Pediococcus parvulus isolate Pediococcus parvulus CIRM-BIA2501]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNAQGEREADFINCVIWRKAAENFSNFTHKGSLVGVDGRIQTR
SYENQQGVRVYVTEVVVENFSLLESRVQSEQRQQQGGNTGFHDNAPQSSGNSNPFDAGQGSNTNSNNSQSSSNGSASSAS
SNPNDPFADNGEQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1166355 AB3212_RS05700 WP_367365193.1 1154579..1155130(+) (ssb) [Pediococcus parvulus isolate Pediococcus parvulus CIRM-BIA2501]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCCGATTTACGATACACCAACAGCGGTGCTGCAGTCGC
TACCTTCACAGTGGCAGTTAATCGTCAGTTTACGAACGCTCAAGGAGAGCGTGAAGCCGATTTTATTAACTGTGTGATTT
GGCGAAAAGCTGCAGAGAACTTCTCTAATTTTACCCATAAAGGCTCGTTGGTTGGAGTAGATGGACGGATTCAAACCCGT
TCGTACGAAAATCAACAAGGCGTCCGAGTATATGTTACAGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGTGT
TCAATCTGAGCAACGTCAACAGCAAGGTGGCAATACGGGATTTCACGACAATGCTCCTCAATCATCCGGTAATAGCAATC
CGTTTGATGCTGGGCAAGGAAGTAACACTAATAGCAATAACAGTCAGAGCAGTAGCAATGGCAGTGCTTCTAGTGCAAGT
TCTAATCCTAACGATCCGTTTGCAGATAACGGCGAACAAATTGATATTTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.054

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.676

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

57.923

0.361

Multiple sequence alignment