Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | AB3213_RS02715 | Genome accession | NZ_OZ061411 |
| Coordinates | 527111..528448 (+) | Length | 445 a.a. |
| NCBI ID | WP_056948838.1 | Uniprot ID | A0AAX0VDK6 |
| Organism | Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 522111..533448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3213_RS02700 | rny | 523552..525117 (+) | 1566 | WP_056948843.1 | ribonuclease Y | - |
| AB3213_RS02705 | - | 525270..526358 (+) | 1089 | WP_056948881.1 | glycosyltransferase family 4 protein | - |
| AB3213_RS02710 | - | 526384..527049 (-) | 666 | WP_056948841.1 | YigZ family protein | - |
| AB3213_RS02715 | comFA | 527111..528448 (+) | 1338 | WP_056948838.1 | DEAD/DEAH box helicase | Machinery gene |
| AB3213_RS02720 | comFC | 528424..529119 (+) | 696 | WP_147658291.1 | ComF family protein | Machinery gene |
| AB3213_RS02725 | raiA | 529246..529791 (+) | 546 | WP_056948836.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| AB3213_RS02730 | secA | 530040..532403 (+) | 2364 | WP_011374203.1 | preprotein translocase subunit SecA | - |
Sequence
Protein
Download Length: 445 a.a. Molecular weight: 50226.69 Da Isoelectric Point: 9.6659
>NTDB_id=1166128 AB3213_RS02715 WP_056948838.1 527111..528448(+) (comFA) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
MGQPVIACGRQFTAAQLADTQNNNYSLPQIERRPAFLRVKQRLICQRCQQVVPSQTCLPDGRHYCAQCLLFGRLVEGDWL
YTIPEDHLFKTATPKLTWAGQLTVYQEQAAQAVVAVIQAHKWHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGGILPEPQRHVAFNWRPRLKKGRLPKRLEHDCQICLKNQQILLFVPQVR
LLKPVANRLSILLPAVRIETVHANDPEQIEKIAAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYTQNPVHFYYQDYTRAIKGACRQIKAQNQRGWRLQSTV
MGQPVIACGRQFTAAQLADTQNNNYSLPQIERRPAFLRVKQRLICQRCQQVVPSQTCLPDGRHYCAQCLLFGRLVEGDWL
YTIPEDHLFKTATPKLTWAGQLTVYQEQAAQAVVAVIQAHKWHVLTAVTGAGKTEMLFQGILVALQKGQRVCLAAPRVAV
CLELYPRLQAAFATTSIMLMHGEQTEPYRYTQLVICTTHQLLKFYHAFDTVIVDEVDAFPFVDNPVLATAVEQACKPQCA
LLYLTATPTPAIKRAIAAKQMTVSELPLRFHGGILPEPQRHVAFNWRPRLKKGRLPKRLEHDCQICLKNQQILLFVPQVR
LLKPVANRLSILLPAVRIETVHANDPEQIEKIAAFRAQQIQLMVTTTILERGVTFKNVAVLVLGAEHMVFNEAVLVQIAG
RAGRHKDYTQNPVHFYYQDYTRAIKGACRQIKAQNQRGWRLQSTV
Nucleotide
Download Length: 1338 bp
>NTDB_id=1166128 AB3213_RS02715 WP_056948838.1 527111..528448(+) (comFA) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
ATGGGACAACCAGTGATTGCCTGTGGCCGCCAGTTTACTGCGGCCCAGTTAGCCGATACGCAAAATAATAATTATAGTTT
ACCACAGATTGAGCGCCGACCCGCGTTTTTACGGGTCAAGCAACGTTTAATCTGCCAACGTTGTCAGCAAGTGGTACCGT
CGCAAACTTGCTTACCAGACGGCCGTCATTATTGCGCGCAGTGTTTGTTATTTGGTCGTTTAGTAGAAGGGGATTGGTTA
TATACAATCCCTGAGGATCATTTATTTAAAACCGCTACACCGAAGTTGACGTGGGCAGGCCAATTAACAGTGTATCAGGA
ACAAGCCGCCCAAGCAGTGGTAGCGGTTATTCAAGCCCATAAATGGCACGTATTAACAGCCGTGACCGGTGCCGGGAAGA
CCGAGATGCTTTTTCAAGGGATTCTAGTCGCACTACAAAAGGGACAGCGAGTGTGTTTGGCAGCACCTAGAGTCGCAGTT
TGTCTAGAACTGTATCCGCGGCTTCAAGCCGCCTTTGCGACGACTAGTATCATGTTGATGCATGGCGAGCAAACCGAGCC
CTATCGCTATACCCAGTTAGTGATTTGCACGACACATCAATTACTGAAGTTTTATCACGCTTTTGATACGGTCATCGTTG
ATGAAGTGGATGCTTTTCCTTTTGTTGATAATCCAGTTTTAGCCACGGCAGTTGAACAAGCCTGTAAGCCTCAGTGTGCG
TTATTATATTTAACGGCTACGCCGACACCAGCCATCAAGCGGGCGATTGCTGCTAAACAAATGACAGTTAGTGAATTACC
GCTTCGCTTTCATGGGGGAATATTGCCAGAACCGCAACGGCATGTCGCTTTCAATTGGCGGCCGCGATTAAAGAAGGGCC
GGTTACCTAAACGACTTGAGCATGATTGCCAGATTTGTTTAAAAAACCAGCAGATTTTGCTATTTGTACCGCAAGTCAGA
TTATTAAAACCAGTTGCCAATCGACTATCAATTTTATTACCGGCGGTCAGAATTGAGACGGTGCACGCAAACGATCCTGA
ACAAATTGAAAAGATCGCGGCGTTTAGGGCTCAACAAATTCAATTAATGGTGACGACCACTATTTTGGAGCGGGGGGTCA
CATTTAAAAATGTTGCGGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAATGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCAGGACGGCATAAAGACTATACCCAAAATCCAGTTCATTTTTATTATCAGGATTATACCCGCGCTATTAAAGGAGC
TTGTCGGCAAATTAAGGCCCAAAATCAGAGGGGATGGCGATTACAATCAACTGTTTAA
ATGGGACAACCAGTGATTGCCTGTGGCCGCCAGTTTACTGCGGCCCAGTTAGCCGATACGCAAAATAATAATTATAGTTT
ACCACAGATTGAGCGCCGACCCGCGTTTTTACGGGTCAAGCAACGTTTAATCTGCCAACGTTGTCAGCAAGTGGTACCGT
CGCAAACTTGCTTACCAGACGGCCGTCATTATTGCGCGCAGTGTTTGTTATTTGGTCGTTTAGTAGAAGGGGATTGGTTA
TATACAATCCCTGAGGATCATTTATTTAAAACCGCTACACCGAAGTTGACGTGGGCAGGCCAATTAACAGTGTATCAGGA
ACAAGCCGCCCAAGCAGTGGTAGCGGTTATTCAAGCCCATAAATGGCACGTATTAACAGCCGTGACCGGTGCCGGGAAGA
CCGAGATGCTTTTTCAAGGGATTCTAGTCGCACTACAAAAGGGACAGCGAGTGTGTTTGGCAGCACCTAGAGTCGCAGTT
TGTCTAGAACTGTATCCGCGGCTTCAAGCCGCCTTTGCGACGACTAGTATCATGTTGATGCATGGCGAGCAAACCGAGCC
CTATCGCTATACCCAGTTAGTGATTTGCACGACACATCAATTACTGAAGTTTTATCACGCTTTTGATACGGTCATCGTTG
ATGAAGTGGATGCTTTTCCTTTTGTTGATAATCCAGTTTTAGCCACGGCAGTTGAACAAGCCTGTAAGCCTCAGTGTGCG
TTATTATATTTAACGGCTACGCCGACACCAGCCATCAAGCGGGCGATTGCTGCTAAACAAATGACAGTTAGTGAATTACC
GCTTCGCTTTCATGGGGGAATATTGCCAGAACCGCAACGGCATGTCGCTTTCAATTGGCGGCCGCGATTAAAGAAGGGCC
GGTTACCTAAACGACTTGAGCATGATTGCCAGATTTGTTTAAAAAACCAGCAGATTTTGCTATTTGTACCGCAAGTCAGA
TTATTAAAACCAGTTGCCAATCGACTATCAATTTTATTACCGGCGGTCAGAATTGAGACGGTGCACGCAAACGATCCTGA
ACAAATTGAAAAGATCGCGGCGTTTAGGGCTCAACAAATTCAATTAATGGTGACGACCACTATTTTGGAGCGGGGGGTCA
CATTTAAAAATGTTGCGGTTTTGGTCTTAGGCGCGGAACACATGGTGTTTAATGAAGCCGTTTTGGTCCAGATTGCCGGG
CGAGCAGGACGGCATAAAGACTATACCCAAAATCCAGTTCATTTTTATTATCAGGATTATACCCGCGCTATTAAAGGAGC
TTGTCGGCAAATTAAGGCCCAAAATCAGAGGGGATGGCGATTACAATCAACTGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Latilactobacillus sakei subsp. sakei 23K |
91.685 |
100 |
0.917 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
38.979 |
96.854 |
0.378 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
38.747 |
96.854 |
0.375 |
| comFA/cflA | Streptococcus pneumoniae D39 |
38.747 |
96.854 |
0.375 |
| comFA/cflA | Streptococcus pneumoniae R6 |
38.747 |
96.854 |
0.375 |
| comFA/cflA | Streptococcus mitis NCTC 12261 |
38.515 |
96.854 |
0.373 |
| comFA/cflA | Streptococcus mitis SK321 |
38.372 |
96.629 |
0.371 |