Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB3213_RS02720 Genome accession   NZ_OZ061411
Coordinates   528424..529119 (+) Length   231 a.a.
NCBI ID   WP_147658291.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523424..534119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3213_RS02700 rny 523552..525117 (+) 1566 WP_056948843.1 ribonuclease Y -
  AB3213_RS02705 - 525270..526358 (+) 1089 WP_056948881.1 glycosyltransferase family 4 protein -
  AB3213_RS02710 - 526384..527049 (-) 666 WP_056948841.1 YigZ family protein -
  AB3213_RS02715 comFA 527111..528448 (+) 1338 WP_056948838.1 DEAD/DEAH box helicase Machinery gene
  AB3213_RS02720 comFC 528424..529119 (+) 696 WP_147658291.1 ComF family protein Machinery gene
  AB3213_RS02725 raiA 529246..529791 (+) 546 WP_056948836.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AB3213_RS02730 secA 530040..532403 (+) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  AB3213_RS02735 prfB 532473..533589 (+) 1117 WP_099947623.1 peptide chain release factor 2 -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26933.39 Da        Isoelectric Point: 9.4488

>NTDB_id=1166129 AB3213_RS02720 WP_147658291.1 528424..529119(+) (comFC) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
MAITINCLMCQNVIIEKPSIKQLLQLKPLLKPHICQICLQQFEPISGNQCSDCSRPLLTGILCSDCQHWRQLYPQQHFKN
QALFTYNRAMQLYFQRYKGQGDYQLRLLFERDIQTRFPVKPNVAYVPIPSDEQHQQARGFNPVQGLFENCFPLMSLLKKR
PTEKGQAQKNRAERLASPQFFELIPQKLPDKLQSITILDDIYTTGRTLWHAQQCLRARYPQITINAITLAR

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1166129 AB3213_RS02720 WP_147658291.1 528424..529119(+) (comFC) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
ATGGCGATTACAATCAACTGTTTAATGTGTCAAAATGTCATTATTGAAAAGCCAAGTATTAAACAACTGCTACAACTAAA
ACCACTACTTAAACCGCATATCTGTCAAATTTGTTTACAGCAGTTTGAACCTATCAGTGGCAACCAGTGTTCGGATTGTA
GTCGGCCACTATTGACGGGCATTTTATGTTCTGATTGTCAGCATTGGCGACAACTTTACCCCCAACAGCATTTTAAAAAT
CAAGCATTGTTTACTTATAATCGGGCGATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGATTATCAATTACGGTT
ACTATTTGAACGGGACATTCAAACGCGGTTTCCAGTAAAGCCCAATGTAGCTTACGTGCCGATCCCATCCGATGAGCAAC
ATCAACAAGCACGCGGTTTTAATCCAGTCCAAGGCTTATTCGAAAATTGTTTTCCGCTAATGTCACTCTTGAAAAAGCGA
CCAACGGAAAAGGGGCAAGCGCAAAAAAATCGTGCAGAACGACTCGCAAGTCCGCAATTTTTTGAATTAATACCACAAAA
GTTACCTGATAAGCTACAGTCGATAACGATTCTAGATGATATTTACACGACCGGTCGAACGTTGTGGCATGCTCAGCAAT
GTCTGCGTGCTCGTTATCCGCAAATTACAATTAATGCAATTACTTTGGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

91.549

61.472

0.563

Multiple sequence alignment