Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB3218_RS05860 | Genome accession | NZ_OZ061336 |
| Coordinates | 1180136..1180687 (+) | Length | 183 a.a. |
| NCBI ID | WP_057784112.1 | Uniprot ID | A0A176TM93 |
| Organism | Pediococcus parvulus isolate Pediococcus parvulus F2-sp2-RGJ | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1175136..1185687
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3218_RS05845 | gyrB | 1175161..1177047 (+) | 1887 | WP_367369841.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AB3218_RS05850 | gyrA | 1177071..1179611 (+) | 2541 | WP_260274737.1 | DNA gyrase subunit A | - |
| AB3218_RS05855 | rpsF | 1179805..1180095 (+) | 291 | WP_068805307.1 | 30S ribosomal protein S6 | - |
| AB3218_RS05860 | ssb | 1180136..1180687 (+) | 552 | WP_057784112.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3218_RS05865 | rpsR | 1180709..1180948 (+) | 240 | WP_057784110.1 | 30S ribosomal protein S18 | - |
| AB3218_RS05870 | - | 1181199..1181879 (+) | 681 | WP_367369664.1 | EAL domain-containing protein | - |
| AB3218_RS05875 | - | 1181910..1183263 (+) | 1354 | Protein_1112 | FAD-dependent oxidoreductase | - |
| AB3218_RS05880 | - | 1183431..1184618 (-) | 1188 | WP_068805313.1 | MFS transporter | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 19858.23 Da Isoelectric Point: 4.5070
>NTDB_id=1165990 AB3218_RS05860 WP_057784112.1 1180136..1180687(+) (ssb) [Pediococcus parvulus isolate Pediococcus parvulus F2-sp2-RGJ]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNAQGEREADFINCVIWRKAAENFSNFTHKGSLVGVDGRIQTR
SYENQQGVRVYVTEVVVENFSLLESRAQSEQRQQQGGNTGFHDNAPQSSGNSNPFDAGQGSNTNSNNSQSSSNGSASSAS
SNPNDPFADNGEQIDISDDDLPF
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNAQGEREADFINCVIWRKAAENFSNFTHKGSLVGVDGRIQTR
SYENQQGVRVYVTEVVVENFSLLESRAQSEQRQQQGGNTGFHDNAPQSSGNSNPFDAGQGSNTNSNNSQSSSNGSASSAS
SNPNDPFADNGEQIDISDDDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=1165990 AB3218_RS05860 WP_057784112.1 1180136..1180687(+) (ssb) [Pediococcus parvulus isolate Pediococcus parvulus F2-sp2-RGJ]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCCGATTTACGATACACCAACAGCGGTGCTGCAGTCGC
TACCTTCACAGTGGCAGTTAATCGTCAGTTTACGAACGCTCAAGGAGAGCGTGAAGCCGATTTTATTAACTGTGTGATTT
GGCGAAAAGCTGCAGAGAACTTCTCTAATTTTACCCATAAAGGCTCGTTGGTTGGAGTAGATGGACGGATTCAAACCCGT
TCGTACGAAAATCAACAAGGCGTCCGAGTATATGTTACAGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGTGC
TCAATCTGAGCAACGTCAACAGCAAGGTGGCAATACGGGATTTCACGACAATGCTCCTCAATCATCCGGTAATAGCAATC
CGTTTGATGCTGGGCAAGGAAGTAACACTAATAGCAATAACAGTCAGAGCAGTAGCAATGGCAGTGCTTCTAGTGCAAGT
TCTAATCCTAACGATCCGTTTGCAGATAACGGCGAACAAATTGATATTTCCGATGATGATTTACCATTTTAA
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCCGATTTACGATACACCAACAGCGGTGCTGCAGTCGC
TACCTTCACAGTGGCAGTTAATCGTCAGTTTACGAACGCTCAAGGAGAGCGTGAAGCCGATTTTATTAACTGTGTGATTT
GGCGAAAAGCTGCAGAGAACTTCTCTAATTTTACCCATAAAGGCTCGTTGGTTGGAGTAGATGGACGGATTCAAACCCGT
TCGTACGAAAATCAACAAGGCGTCCGAGTATATGTTACAGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGTGC
TCAATCTGAGCAACGTCAACAGCAAGGTGGCAATACGGGATTTCACGACAATGCTCCTCAATCATCCGGTAATAGCAATC
CGTTTGATGCTGGGCAAGGAAGTAACACTAATAGCAATAACAGTCAGAGCAGTAGCAATGGCAGTGCTTCTAGTGCAAGT
TCTAATCCTAACGATCCGTTTGCAGATAACGGCGAACAAATTGATATTTCCGATGATGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.054 |
100 |
0.661 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.676 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60 |
60.109 |
0.361 |