Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AB3225_RS00600 Genome accession   NZ_OZ061332
Coordinates   127951..130065 (-) Length   704 a.a.
NCBI ID   WP_367370309.1    Uniprot ID   -
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus J116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122951..135065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3225_RS00575 - 123118..124062 (-) 945 WP_076786860.1 hypothetical protein -
  AB3225_RS00580 - 124145..125863 (-) 1719 WP_056966011.1 ribonuclease J -
  AB3225_RS00585 rpsO 126066..126335 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  AB3225_RS00590 rpsT 126612..126866 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  AB3225_RS00595 holA 126922..127950 (-) 1029 WP_076786858.1 DNA polymerase III subunit delta -
  AB3225_RS00600 comEC 127951..130065 (-) 2115 WP_367370309.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3225_RS00605 - 130206..130694 (-) 489 WP_004270740.1 ComE operon protein 2 -
  AB3225_RS00610 comEA 130753..131424 (-) 672 WP_004270751.1 helix-hairpin-helix domain-containing protein Machinery gene
  AB3225_RS00615 - 131500..132546 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  AB3225_RS00620 coaD 132548..133042 (-) 495 WP_065825725.1 pantetheine-phosphate adenylyltransferase -
  AB3225_RS00625 rsmD 133054..133608 (-) 555 WP_004270750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3225_RS00630 - 133614..133904 (-) 291 WP_004270748.1 YlbG family protein -
  AB3225_RS00635 - 133924..135012 (-) 1089 WP_367370310.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79735.13 Da        Isoelectric Point: 9.4794

>NTDB_id=1165943 AB3225_RS00600 WP_367370309.1 127951..130065(-) (comEC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
MVSGLVLCLGGCRFWLARRTYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTVFRRIPPQGWLDWFHQRRQQGLIYLRQLPPALSFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNVSLFCLLPLYALFVGGGTSITRAI
GLILLRLICEVSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWGAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLVQQPFNRHNLLIDTGGRLALPQEKWQRRQI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLAGQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGRHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=1165943 AB3225_RS00600 WP_367370309.1 127951..130065(-) (comEC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCGTTTTTGGCTGGCACGGCGCACCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAATTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTTTATCAAGCAAATATAATTGACGGAACGGTCTTTAGACGCATTCCACCACAAGGTTGGC
TAGATTGGTTCCACCAACGGCGCCAACAGGGGCTGATTTATCTCCGACAATTGCCACCAGCGTTGAGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATGTTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAAGTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGGATTGATTT
ATCAGCGGCGCCATGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGTTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAG
CTTGGATTGCAACGTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGTCTGTTGGTTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGATACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGACAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGGCCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGCAATGCTGACTCACTCGT
TTTGCAAACGCAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGCTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)

Competence protein (Competence)

(173-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.942

100

0.632

Multiple sequence alignment