Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3Y92_RS19290 Genome accession   NZ_OZ061327
Coordinates   3736050..3736595 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3731050..3741595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS19265 - 3731312..3731920 (-) 609 WP_058013193.1 alpha/beta hydrolase -
  AB3Y92_RS19270 - 3731917..3732888 (-) 972 WP_058013192.1 ring-cleaving dioxygenase -
  AB3Y92_RS19275 opuFB 3733080..3734597 (-) 1518 WP_058013191.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  AB3Y92_RS19280 - 3734590..3735555 (-) 966 WP_058013190.1 ABC transporter ATP-binding protein -
  AB3Y92_RS19285 rpsR 3735766..3736005 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  AB3Y92_RS19290 ssbA 3736050..3736595 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  AB3Y92_RS19295 rpsF 3736632..3736919 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  AB3Y92_RS19300 ychF 3737028..3738128 (-) 1101 WP_058013189.1 redox-regulated ATPase YchF -
  AB3Y92_RS19305 - 3738345..3738551 (-) 207 WP_058013188.1 DUF951 domain-containing protein -
  AB3Y92_RS19310 - 3738846..3740165 (+) 1320 WP_058013187.1 hypothetical protein -
  AB3Y92_RS19315 - 3740181..3740591 (+) 411 WP_044139037.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=1165940 AB3Y92_RS19290 WP_003215157.1 3736050..3736595(-) (ssbA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1165940 AB3Y92_RS19290 WP_003215157.1 3736050..3736595(-) (ssbA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment