Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB3Y92_RS15115 Genome accession   NZ_OZ061327
Coordinates   2895247..2895888 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2890247..2900888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS15080 - 2891378..2891809 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  AB3Y92_RS15085 - 2891809..2892150 (+) 342 WP_058013796.1 Na(+)/H(+) antiporter subunit C -
  AB3Y92_RS15090 - 2892143..2893621 (+) 1479 WP_058013795.1 Na+/H+ antiporter subunit D -
  AB3Y92_RS15095 - 2893628..2894107 (+) 480 WP_058013794.1 Na+/H+ antiporter subunit E -
  AB3Y92_RS15100 - 2894107..2894388 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  AB3Y92_RS15105 mnhG 2894372..2894746 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AB3Y92_RS15110 - 2894834..2895223 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  AB3Y92_RS15115 comA 2895247..2895888 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  AB3Y92_RS15120 comP 2895969..2898284 (-) 2316 WP_144461870.1 ATP-binding protein Regulator
  AB3Y92_RS15125 comX 2898342..2898509 (-) 168 WP_081042274.1 competence pheromone ComX -
  AB3Y92_RS15130 - 2898506..2899420 (-) 915 WP_061409480.1 polyprenyl synthetase family protein -
  AB3Y92_RS15135 degQ 2899572..2899712 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB3Y92_RS15140 - 2900218..2900571 (+) 354 WP_058013790.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=1165926 AB3Y92_RS15115 WP_058013793.1 2895247..2895888(-) (comA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1165926 AB3Y92_RS15115 WP_058013793.1 2895247..2895888(-) (comA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAACAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATA
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCAATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGTTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment