Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB3Y92_RS11810 Genome accession   NZ_OZ061327
Coordinates   2285815..2286108 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2280815..2291108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS11760 sinR 2280985..2281320 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AB3Y92_RS11765 tasA 2281388..2282188 (-) 801 WP_058014688.1 biofilm matrix protein TasA -
  AB3Y92_RS11770 sipW 2282246..2282818 (-) 573 WP_058014687.1 signal peptidase I SipW -
  AB3Y92_RS11775 tapA 2282863..2283390 (-) 528 WP_058014686.1 amyloid fiber anchoring/assembly protein TapA -
  AB3Y92_RS11780 - 2283657..2283968 (+) 312 WP_061410249.1 YqzG/YhdC family protein -
  AB3Y92_RS11785 - 2284002..2284196 (-) 195 WP_044140973.1 YqzE family protein -
  AB3Y92_RS11790 comGG 2284256..2284639 (-) 384 WP_058014684.1 competence type IV pilus minor pilin ComGG -
  AB3Y92_RS11795 comGF 2284636..2285136 (-) 501 WP_061408553.1 competence type IV pilus minor pilin ComGF -
  AB3Y92_RS11800 comGE 2285075..2285392 (-) 318 WP_058014682.1 competence type IV pilus minor pilin ComGE -
  AB3Y92_RS11805 comGD 2285376..2285822 (-) 447 WP_061408555.1 competence type IV pilus minor pilin ComGD -
  AB3Y92_RS11810 comGC 2285815..2286108 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3Y92_RS11815 comGB 2286125..2287165 (-) 1041 WP_061408557.1 competence type IV pilus assembly protein ComGB -
  AB3Y92_RS11820 comGA 2287146..2288216 (-) 1071 WP_081106456.1 competence type IV pilus ATPase ComGA Machinery gene
  AB3Y92_RS11825 - 2288476..2289066 (-) 591 WP_058014679.1 hypothetical protein -
  AB3Y92_RS11830 - 2289467..2290339 (-) 873 WP_058014678.1 STAS domain-containing protein -
  AB3Y92_RS11840 - 2290563..2290943 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=1165915 AB3Y92_RS11810 WP_003217322.1 2285815..2286108(-) (comGC) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1165915 AB3Y92_RS11810 WP_003217322.1 2285815..2286108(-) (comGC) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCAATTCTTTTACTGATTACCATTCC
GAATATCACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACACAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment