Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB3Y92_RS11760 Genome accession   NZ_OZ061327
Coordinates   2280985..2281320 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275985..2286320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS11740 gcvT 2276463..2277560 (-) 1098 WP_144462734.1 glycine cleavage system aminomethyltransferase GcvT -
  AB3Y92_RS11745 - 2278122..2279792 (+) 1671 WP_061408550.1 DEAD/DEAH box helicase -
  AB3Y92_RS11750 - 2279807..2280604 (+) 798 WP_144462732.1 YqhG family protein -
  AB3Y92_RS11755 - 2280787..2280951 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  AB3Y92_RS11760 sinR 2280985..2281320 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  AB3Y92_RS11765 tasA 2281388..2282188 (-) 801 WP_058014688.1 biofilm matrix protein TasA -
  AB3Y92_RS11770 sipW 2282246..2282818 (-) 573 WP_058014687.1 signal peptidase I SipW -
  AB3Y92_RS11775 tapA 2282863..2283390 (-) 528 WP_058014686.1 amyloid fiber anchoring/assembly protein TapA -
  AB3Y92_RS11780 - 2283657..2283968 (+) 312 WP_061410249.1 YqzG/YhdC family protein -
  AB3Y92_RS11785 - 2284002..2284196 (-) 195 WP_044140973.1 YqzE family protein -
  AB3Y92_RS11790 comGG 2284256..2284639 (-) 384 WP_058014684.1 competence type IV pilus minor pilin ComGG -
  AB3Y92_RS11795 comGF 2284636..2285136 (-) 501 WP_061408553.1 competence type IV pilus minor pilin ComGF -
  AB3Y92_RS11800 comGE 2285075..2285392 (-) 318 WP_058014682.1 competence type IV pilus minor pilin ComGE -
  AB3Y92_RS11805 comGD 2285376..2285822 (-) 447 WP_061408555.1 competence type IV pilus minor pilin ComGD -
  AB3Y92_RS11810 comGC 2285815..2286108 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=1165914 AB3Y92_RS11760 WP_012010555.1 2280985..2281320(+) (sinR) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1165914 AB3Y92_RS11760 WP_012010555.1 2280985..2281320(+) (sinR) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment