Detailed information NTG1165884

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AB3Y92_RS00585
• Genome accession: NZ_OZ061327
• Coordinates: 106671..109106 (+)
• Length: 811 a.a.
• NCBI ID: WP_003216969.1
• Uniprot ID: -
• Organism: Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 101671..114106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y92_RS00570	-	104542..105006 (+)	465	WP_003217184.1	CtsR family transcriptional regulator	-
AB3Y92_RS00575	-	105021..105578 (+)	558	WP_034665655.1	UvrB/UvrC motif-containing protein	-
AB3Y92_RS00580	-	105583..106674 (+)	1092	WP_058015794.1	protein arginine kinase	-
AB3Y92_RS00585	clpC	106671..109106 (+)	2436	WP_003216969.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
AB3Y92_RS00590	radA	109200..110579 (+)	1380	WP_058015795.1	DNA repair protein RadA	Machinery gene
AB3Y92_RS00595	disA	110582..111661 (+)	1080	WP_012008686.1	DNA integrity scanning diadenylate cyclase DisA	-
AB3Y92_RS00600	-	111815..112915 (+)	1101	WP_058015822.1	PIN/TRAM domain-containing protein	-
AB3Y92_RS00605	ispD	112929..113618 (+)	690	WP_058015796.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB3Y92_RS00610	ispF	113622..114098 (+)	477	WP_058015797.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 811 a.a.
• Molecular weight: 90030.78 Da
• Isoelectric Point: 6.1821

>NTDB_id=1165884 AB3Y92_RS00585 WP_003216969.1 106671..109106(+) (clpC) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQQIVLDVEDG
EIVVKTTAATN

Nucleotide

• Length: 2436 bp

>NTDB_id=1165884 AB3Y92_RS00585 WP_003216969.1 106671..109106(+) (clpC) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAATATTGGTACTGAACACATTTTACTTGGTCTTGTACGCGAGGGTGAGGGTATTGCCGCAAAAGCGTTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTCCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGAGATTTAACAGCGATTGCGAAAGAAGACAGCTTGGACCCTGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAACAACCCTGTGCTGATTGGTGAGCCCGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCACAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGGGATAAACGAGTG
ATGACGCTTGATATGGGAACCGTTGTAGCAGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTGATTGGTGCTGGCGGAGCAGAAGGTG
CGATTGACGCATCTAATATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCAACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTAGATCAGCCATCCGTTGATGA
AAGTATTCAAATCTTAAGAGGTCTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATCACAGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAATTGGATGAAGTACGCAAGGA
AAAGGATGCGGCTGTTCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACAGAGCAGCGTTTACGTGAAAAAG
TAGAAGTCACAAAGAAATCTTGGAAAGAAAAGCAAGGTCAGGAGAATTCAGAGGTATCAGTGGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCCCAAACAGAAACAGATAAGCTTCTGAATATGGAACAATTACT
CCATTCTCGTGTAATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGTCTAAAAG
ATCCAAAACGTCCAATTGGCTCCTTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTTGCA
GAGTCTATTTTTGGTGATGAAGAAGCGATGATCCGTATCGATATGTCTGAATACATGGAGAAACATTCTACATCTAGACT
TGTTGGGTCACCTCCAGGCTATGTTGGCTATGAAGAAGGCGGACAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCGCATCCAGATGTATTCAACATCTTACTGCAAGTATTAGAAGATGGTCGTCTG
ACGGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGCTTTAACGTGCAGGATGAAGGTCAAAATTACAAAGATATGAAGGGCAAAGTGATGGGCGAGT
TGAAACGTGCGTTTAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATTTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATTGAATTGACAGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGACCTTGAGTACGGTGCGCGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTAAAGGGTAATATTGAAAAAGGTCAACAAATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACTAACTAA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-144)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-69)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (715-794)

• AAA lid domain (AAA_lid_9) (344-445)

• AAA domain (Cdc48 subfamily) (AAA_2) (537-709)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	95.931	100	0.959
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.136	99.877	0.491
clpC	Streptococcus thermophilus LMD-9	46.247	100	0.471
clpC	Streptococcus thermophilus LMG 18311	45.884	100	0.467
clpC	Streptococcus pneumoniae Rx1	45.802	99.877	0.457
clpC	Streptococcus pneumoniae D39	45.802	99.877	0.457
clpC	Streptococcus pneumoniae TIGR4	45.802	99.877	0.457
clpC	Streptococcus mutans UA159	43.675	100	0.451
clpC	Lactococcus lactis subsp. cremoris KW2	49.509	87.916	0.435
clpE	Streptococcus mutans UA159	53.478	79.778	0.427
clpE	Streptococcus pneumoniae TIGR4	52.713	79.531	0.419
clpE	Streptococcus pneumoniae Rx1	52.713	79.531	0.419
clpE	Streptococcus pneumoniae D39	52.713	79.531	0.419
clpE	Streptococcus pneumoniae R6	52.713	79.531	0.419