Detailed information NTG1165885

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: AB3Y92_RS00590
• Genome accession: NZ_OZ061327
• Coordinates: 109200..110579 (+)
• Length: 459 a.a.
• NCBI ID: WP_058015795.1
• Uniprot ID: -
• Organism: Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 104200..115579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y92_RS00570	-	104542..105006 (+)	465	WP_003217184.1	CtsR family transcriptional regulator	-
AB3Y92_RS00575	-	105021..105578 (+)	558	WP_034665655.1	UvrB/UvrC motif-containing protein	-
AB3Y92_RS00580	-	105583..106674 (+)	1092	WP_058015794.1	protein arginine kinase	-
AB3Y92_RS00585	clpC	106671..109106 (+)	2436	WP_003216969.1	ATP-dependent protease ATP-binding subunit ClpC	Regulator
AB3Y92_RS00590	radA	109200..110579 (+)	1380	WP_058015795.1	DNA repair protein RadA	Machinery gene
AB3Y92_RS00595	disA	110582..111661 (+)	1080	WP_012008686.1	DNA integrity scanning diadenylate cyclase DisA	-
AB3Y92_RS00600	-	111815..112915 (+)	1101	WP_058015822.1	PIN/TRAM domain-containing protein	-
AB3Y92_RS00605	ispD	112929..113618 (+)	690	WP_058015796.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB3Y92_RS00610	ispF	113622..114098 (+)	477	WP_058015797.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50052.60 Da
• Isoelectric Point: 7.9305

>NTDB_id=1165885 AB3Y92_RS00590 WP_058015795.1 109200..110579(+) (radA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPVNRRSAFNHSVQTIQKPSPISAIETSDEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIKSTSLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide

• Length: 1380 bp

>NTDB_id=1165885 AB3Y92_RS00590 WP_058015795.1 109200..110579(+) (radA) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAATCAGCCAAATGGATGGGGAAATGTCCAGGCTG
CGGCACGTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGTAAACCGTCGAAGCGCTTTTAATCATTCTGTCC
AAACCATTCAAAAACCTTCACCTATTTCTGCAATTGAAACATCAGATGAACCCCGAATCAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGCTCTCTTGTTCTCATTGGCGGAGATCCTGGAATTGGGAAGTCCACATT
ATTATTACAAGTATCAGCACAGCTCTCAGACAAAAATCAGAATGTATTATACATATCCGGTGAGGAGTCCATTAAACAAA
CGAAGTTAAGAGCGGACCGCCTCGGCATAAAAAGCACCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTCGTGGTGGATTCGATTCAAACTGTTTATCAAAGCGATATTACGTCAGC
TCCTGGGTCTGTATCTCAAGTGAGAGAATGTACAGCGCAGCTGATGAAGATTGCCAAGACAAATGGGATTCCAATTTTTA
TTGTTGGTCACGTGACCAAAGAAGGCTCGATCGCAGGTCCACGTCTTTTAGAGCATATGGTGGACACGGTTCTTTATTTT
GAAGGTGAGCGTCATCATACGTTTCGTATCTTACGTGCAGTGAAAAACCGATTTGGTTCAACGAATGAACTAGGGATTTT
TGAAATGAGAGAGGAAGGGCTCACGGAAGTATTAAACCCATCCGAAATTTTCTTAGAAGAACGTTCGGCAGGTGTATCTG
GTTCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTTGTCGAGATACAAGCGCTAATTTCACCAACAAGCTTC
GGAAATCCGCGTAGAATGGCCACTGGTCTTGATCATAATCGAGTGTCACTGCTCATGGCGGTTTTAGAAAAACGTGTTGG
ACTGCTGCTGCAAAACCAGGATGCGTATTTAAAGGTCGCAGGCGGTGTGAAGCTTGACGAACCAGCAATTGACTTGGCCA
TTGCGGTCAGTATTGCCTCCAGCTTTAAAGACGCAGCGCCGCATCAAGCGGATTGCTTTATAGGAGAGGTCGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCGAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTCGGTGTAGAAAATGTAGCGGAGGCACTTCGAA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (65-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (365-430)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	86.9	99.782	0.867
radA	Streptococcus mitis NCTC 12261	61.589	98.693	0.608
radA	Streptococcus pneumoniae Rx1	61.589	98.693	0.608
radA	Streptococcus pneumoniae D39	61.589	98.693	0.608
radA	Streptococcus pneumoniae R6	61.589	98.693	0.608
radA	Streptococcus pneumoniae TIGR4	61.589	98.693	0.608
radA	Streptococcus mitis SK321	61.589	98.693	0.608