Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3217_RS00390 Genome accession   NZ_OZ061292
Coordinates   82303..82854 (-) Length   183 a.a.
NCBI ID   WP_057784112.1    Uniprot ID   A0A176TM93
Organism   Pediococcus parvulus isolate Pediococcus parvulus IOEB-9646     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 77303..87854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3217_RS00370 - 78363..79550 (+) 1188 WP_367365494.1 MFS transporter -
  AB3217_RS00375 - 79718..81079 (-) 1362 WP_260267505.1 FAD-dependent oxidoreductase -
  AB3217_RS00380 - 81110..81790 (-) 681 WP_057784108.1 EAL domain-containing protein -
  AB3217_RS00385 rpsR 82042..82281 (-) 240 WP_057784110.1 30S ribosomal protein S18 -
  AB3217_RS00390 ssb 82303..82854 (-) 552 WP_057784112.1 single-stranded DNA-binding protein Machinery gene
  AB3217_RS00395 rpsF 82895..83185 (-) 291 WP_068805307.1 30S ribosomal protein S6 -
  AB3217_RS00400 gyrA 83379..85919 (-) 2541 WP_260274737.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19858.23 Da        Isoelectric Point: 4.5070

>NTDB_id=1165730 AB3217_RS00390 WP_057784112.1 82303..82854(-) (ssb) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-9646]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNAQGEREADFINCVIWRKAAENFSNFTHKGSLVGVDGRIQTR
SYENQQGVRVYVTEVVVENFSLLESRAQSEQRQQQGGNTGFHDNAPQSSGNSNPFDAGQGSNTNSNNSQSSSNGSASSAS
SNPNDPFADNGEQIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1165730 AB3217_RS00390 WP_057784112.1 82303..82854(-) (ssb) [Pediococcus parvulus isolate Pediococcus parvulus IOEB-9646]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCCGATTTACGATACACCAACAGCGGTGCTGCAGTCGC
TACCTTCACAGTGGCAGTTAATCGTCAGTTTACGAACGCTCAAGGAGAGCGTGAAGCCGATTTTATTAACTGTGTGATTT
GGCGAAAAGCTGCAGAGAACTTCTCTAATTTTACCCATAAAGGCTCGTTGGTTGGAGTAGATGGACGGATTCAAACCCGT
TCGTACGAAAATCAACAAGGCGTCCGAGTATATGTTACAGAAGTTGTTGTTGAAAACTTTTCATTGTTGGAATCCCGTGC
TCAATCTGAGCAACGTCAACAGCAAGGTGGCAATACGGGATTTCACGACAATGCTCCTCAATCATCCGGTAATAGCAATC
CGTTTGATGCTGGGCAAGGAAGTAACACTAATAGCAATAACAGTCAGAGCAGTAGCAATGGCAGTGCTTCTAGTGCAAGT
TCTAATCCTAACGATCCGTTTGCAGATAACGGCGAACAAATTGATATTTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A176TM93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.054

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.676

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

60.109

0.361

Multiple sequence alignment