Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3Y95_RS06900 Genome accession   NZ_OZ061245
Coordinates   1418433..1419296 (-) Length   287 a.a.
NCBI ID   WP_367297346.1    Uniprot ID   -
Organism   Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1413433..1424296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y95_RS06885 xerC 1413878..1414786 (-) 909 WP_003678433.1 tyrosine recombinase XerC -
  AB3Y95_RS06890 trmFO 1414849..1416162 (-) 1314 WP_367297345.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3Y95_RS06895 topA 1416261..1418336 (-) 2076 WP_003678435.1 type I DNA topoisomerase -
  AB3Y95_RS06900 dprA 1418433..1419296 (-) 864 WP_367297346.1 DNA-processing protein DprA Machinery gene
  AB3Y95_RS06905 - 1419348..1420106 (-) 759 WP_367297347.1 ribonuclease HII -
  AB3Y95_RS06910 ylqF 1420099..1420956 (-) 858 WP_219481440.1 ribosome biogenesis GTPase YlqF -
  AB3Y95_RS06915 - 1421638..1424169 (-) 2532 WP_367297348.1 glycoside hydrolase family 3 C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31413.38 Da        Isoelectric Point: 8.8867

>NTDB_id=1165592 AB3Y95_RS06900 WP_367297346.1 1418433..1419296(-) (dprA) [Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685]
MLPQTFLLKLHLCPGIGQVGELRIAEYLRQRPTAQLDVTQLCQLAHLNARQIQRLQHAWLSPQLAMAVRQHQQINTLTWL
DAAYPEYLRESYRPPAVLFYQGDLNLLQQPVLALVGARQATNYTQRVLSQFMPALVANQVVTISGLAAGADRMAHLTTLA
AHGSTIAVIGTGLDVYYPRVNQALQQRIATTGLVLTEYPLGSSPQRHHFPERNRILAGLCQALCVTEARHHSGSLITANL
ALQANRNVLAVPGALWQPLSVGCNQLIAAGARPALSATDLLEELAII

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1165592 AB3Y95_RS06900 WP_367297346.1 1418433..1419296(-) (dprA) [Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685]
ATGCTACCCCAAACTTTTTTACTGAAACTGCATCTCTGCCCTGGAATCGGCCAGGTGGGTGAACTGCGTATTGCTGAATA
CTTACGGCAACGTCCAACAGCTCAACTAGACGTTACACAACTATGTCAGCTAGCACACTTAAATGCACGACAGATCCAAC
GCTTACAACATGCTTGGCTGAGCCCACAATTGGCTATGGCCGTACGTCAGCATCAGCAGATCAATACTTTGACCTGGCTT
GATGCTGCTTATCCTGAATATTTACGTGAAAGTTATCGCCCGCCGGCTGTATTATTCTATCAAGGTGATTTAAACCTATT
GCAGCAGCCGGTATTAGCTTTAGTTGGTGCGCGGCAAGCGACTAATTATACCCAACGTGTGCTCAGCCAATTTATGCCGG
CGTTAGTCGCTAATCAAGTCGTGACGATCAGTGGTTTGGCCGCAGGGGCTGATCGAATGGCACATTTAACCACGTTAGCT
GCTCATGGTTCGACGATTGCAGTGATTGGTACAGGTCTAGATGTTTATTATCCACGAGTTAATCAAGCACTGCAGCAGCG
TATTGCCACAACTGGCCTAGTGTTAACCGAATATCCATTAGGCAGTTCACCGCAGCGGCATCACTTTCCCGAGCGGAACC
GAATTTTGGCCGGCTTGTGTCAAGCGTTATGTGTGACTGAAGCACGTCACCACAGTGGCAGTTTGATTACCGCTAATTTA
GCGTTGCAGGCTAATCGTAATGTTTTAGCGGTGCCAGGGGCACTGTGGCAACCACTCTCGGTCGGTTGTAATCAGCTAAT
TGCCGCCGGTGCGCGGCCGGCACTTTCGGCCACTGATCTACTTGAAGAATTGGCTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

51.786

97.561

0.505
  dprA Glaesserella parasuis strain SC1401

37.847

100

0.38
  dprA Vibrio campbellii strain DS40M4

36.824

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.259

94.077

0.369

Multiple sequence alignment