Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3235_RS00040 Genome accession   NZ_OZ061221
Coordinates   9272..9784 (+) Length   170 a.a.
NCBI ID   WP_010782258.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4272..14784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS00025 gyrB 4274..6223 (+) 1950 WP_010782260.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB3235_RS00030 gyrA 6238..8742 (+) 2505 WP_301521415.1 DNA gyrase subunit A -
  AB3235_RS00035 rpsF 8925..9227 (+) 303 WP_010742561.1 30S ribosomal protein S6 -
  AB3235_RS00040 ssb 9272..9784 (+) 513 WP_010782258.1 single-stranded DNA-binding protein Machinery gene
  AB3235_RS00045 rpsR 9808..10041 (+) 234 WP_010742563.1 30S ribosomal protein S18 -
  AB3235_RS00050 - 10224..12188 (+) 1965 WP_114525181.1 DHH family phosphoesterase -
  AB3235_RS00055 rplI 12185..12637 (+) 453 WP_010782256.1 50S ribosomal protein L9 -
  AB3235_RS00060 dnaB 12767..14128 (+) 1362 WP_367377385.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19017.57 Da        Isoelectric Point: 4.5909

>NTDB_id=1165512 AB3235_RS00040 WP_010782258.1 9272..9784(+) (ssb) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MINNVVLVGRLTKDPDLRYTANGTGVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRNASEQRQQNPSNSNDNFQGGSNNFNNNNYDQSSQSAKNTMPDFDRDSDPFSGSS
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1165512 AB3235_RS00040 WP_010782258.1 9272..9784(+) (ssb) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
TTGATTAATAATGTTGTATTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTATACAGCAAATGGTACTGGAGTTGC
AACGTTTACCTTAGCGGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAAGCGGACTTTATCAATTGTGTGATCT
GGCGGAAATCTGCTGAAACTTTAGCTAATTACGCGCGTAAAGGAACTCTTTTAGGGGTTACGGGACGCATCCAAACAAGA
AATTATGAAAATCAGCAAGGACAACGTGTCTATGTGACTGAGGTTGTTGCTGAAAACTTCCAATTATTGGAATCTCGCAA
TGCGAGTGAACAACGTCAACAGAATCCAAGCAATTCTAATGACAATTTCCAAGGCGGGTCAAATAATTTTAACAACAACA
ACTATGATCAATCCTCTCAGTCAGCTAAGAACACTATGCCTGACTTCGATCGAGATTCAGATCCATTCAGTGGGTCCTCA
ATCGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.335

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment