Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AU14_RS13700 Genome accession   NZ_CP007151
Coordinates   2948442..2949824 (-) Length   460 a.a.
NCBI ID   WP_041341677.1    Uniprot ID   W5YS68
Organism   Marinobacter similis strain A3d10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2943442..2954824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU14_RS13675 (AU14_14135) - 2943507..2943989 (+) 483 WP_041341667.1 PilX N-terminal domain-containing pilus assembly protein -
  AU14_RS13680 (AU14_14140) - 2944015..2944389 (+) 375 WP_041341671.1 hypothetical protein -
  AU14_RS21860 (AU14_14145) - 2944457..2944642 (+) 186 WP_052472056.1 VWA domain-containing protein -
  AU14_RS13685 (AU14_14150) - 2944642..2946579 (+) 1938 WP_052472057.1 pilus assembly protein -
  AU14_RS21865 (AU14_14155) - 2946549..2946938 (+) 390 WP_052472058.1 hypothetical protein -
  AU14_RS21870 - 2946928..2947281 (+) 354 WP_052472059.1 hypothetical protein -
  AU14_RS23940 pilA 2947288..2947434 (+) 147 WP_158498322.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AU14_RS23945 - 2947452..2947736 (+) 285 WP_158498323.1 type IV pilin protein -
  AU14_RS13695 (AU14_14165) - 2947770..2948330 (-) 561 WP_041341674.1 GspH/FimT family pseudopilin -
  AU14_RS13700 (AU14_14170) pilR 2948442..2949824 (-) 1383 WP_041341677.1 sigma-54 dependent transcriptional regulator Regulator
  AU14_RS13705 (AU14_14175) - 2949881..2951524 (-) 1644 WP_041341680.1 ATP-binding protein -
  AU14_RS13710 (AU14_14180) - 2951618..2953281 (+) 1664 Protein_3013 NAD+ synthase -
  AU14_RS13715 (AU14_14185) - 2953303..2954136 (-) 834 WP_041344007.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50470.27 Da        Isoelectric Point: 4.8740

>NTDB_id=116544 AU14_RS13700 WP_041341677.1 2948442..2949824(-) (pilR) [Marinobacter similis strain A3d10]
MTTHTALIVDDEPDIRDLLEITLTRMGIKAQTASDLTSARKLLDEQSFHLCLTDMNLPDGNGIELVQWIQQHAPATPVAV
ITAYGNMDTAIQSLKAGAFDFVSKPVELPRLRELVNSALRLSQPKPEQDDAADEPGLLLGNSPQIKKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAIENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVAVDIRVLSATHKNLPDLVQEGSFRQDLYYRINVIELAVPPLRDRSDDITLLA
DHILERIAGEYECNPASLTKAALQHLQSYDFPGNVRELENILERAFTLCDDDAIDADDLHLGNGTPSSASSLNGDTGSVG
DSSISVPEGEIDLEGYLETIERQTIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=116544 AU14_RS13700 WP_041341677.1 2948442..2949824(-) (pilR) [Marinobacter similis strain A3d10]
ATGACCACTCACACCGCGCTGATTGTTGACGACGAACCAGACATTCGGGATCTGCTGGAAATCACCCTGACCCGCATGGG
TATCAAGGCACAGACCGCTTCGGACCTGACCAGTGCCCGAAAACTGCTGGACGAACAAAGCTTTCACCTGTGCCTCACGG
ACATGAACCTTCCTGACGGCAATGGCATCGAACTGGTGCAGTGGATCCAGCAACACGCGCCCGCCACCCCAGTTGCCGTG
ATCACCGCCTACGGCAATATGGATACGGCCATTCAGTCCCTGAAAGCCGGGGCATTCGACTTCGTATCCAAGCCGGTGGA
ACTACCCCGCCTGCGGGAATTGGTAAACAGCGCCCTGCGATTGTCGCAGCCCAAACCCGAACAGGACGACGCCGCCGATG
AGCCCGGATTGCTGCTGGGCAACTCACCCCAGATCAAGAAACTGCGCAACCAGACCCGCAAGTTGGCCCGAAGCCAAGCA
CCTGTATTCATCAGCGGCGAATCAGGCAGCGGTAAGGAACTGGTCGCCCGGATGATTCACCTGCAGGGGCCACGGCGTGA
GGGTCCTTTCATTGCGGTGAACTGTGGTGCGATTCCGTCGGAGCTGATGGAAAGTGAGTTTTTTGGGCATAAGAAGGGTA
GTTTTACTGGTGCCATCGAAAATAAGGACGGTCTGTTCCGCTCCGCTAACGGAGGTACTCTATTCCTGGACGAAGTCGCA
GATCTCCCCCTAGCGATGCAGGTAAAATTGCTACGCGCTATCCAGGAAAAAGCAGTAAGGCCTGTGGGTGATACCAAAGA
GGTGGCAGTGGATATTCGGGTGCTGAGTGCCACCCACAAAAATCTGCCCGATCTGGTCCAGGAGGGAAGCTTCCGCCAGG
ATCTGTATTACCGAATCAACGTCATCGAACTTGCTGTGCCGCCGCTGCGGGACCGAAGTGATGACATTACCTTGCTTGCG
GACCACATCCTTGAGCGAATTGCGGGCGAATATGAGTGCAATCCGGCCAGCCTGACCAAGGCTGCACTGCAACACCTCCA
GAGCTACGATTTCCCAGGCAACGTGCGGGAACTTGAGAACATTCTGGAGCGGGCATTCACTTTGTGTGATGACGATGCGA
TAGATGCGGACGATCTTCATCTCGGCAATGGGACCCCGTCATCTGCGTCATCCCTTAATGGCGATACCGGATCAGTAGGC
GACAGCAGCATCTCGGTGCCGGAAGGCGAGATTGACCTGGAAGGCTATCTCGAAACGATCGAGCGACAGACCATTGAAAA
AGCTCTGGAGGCTACCCGTTGGAACAAGACAGCGGCGGCCAAGCGCCTGGGGATAAGCTTTCGGGCGTTGAGATATCGGT
TGAAGAAGCTCGGAATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W5YS68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.859

100

0.65
  pilR Acinetobacter baumannii strain A118

52.597

100

0.528

Multiple sequence alignment