Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W57_RS02070 Genome accession   NZ_OZ060382
Coordinates   432864..433370 (-) Length   168 a.a.
NCBI ID   WP_367677493.1    Uniprot ID   -
Organism   Buchnera aphidicola (Chaitophorus populicola) strain Chpopulicola-3609     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 427864..438370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W57_RS02050 (BUCHPPLA3609_408) - 428428..430029 (-) 1602 WP_367677489.1 peptide chain release factor 3 -
  AB4W57_RS02055 (BUCHPPLA3609_409) ansA 430233..431246 (+) 1014 WP_367677490.1 asparaginase -
  AB4W57_RS02060 (BUCHPPLA3609_410) - 431291..431866 (-) 576 WP_367677491.1 NifU family protein -
  AB4W57_RS02065 (BUCHPPLA3609_411) - 432015..432761 (+) 747 WP_367677492.1 alpha/beta fold hydrolase -
  AB4W57_RS02070 (BUCHPPLA3609_412) ssb 432864..433370 (-) 507 WP_367677493.1 single-stranded DNA-binding protein Machinery gene
  AB4W57_RS02075 (BUCHPPLA3609_413) dusA 433478..434455 (+) 978 WP_367677494.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AB4W57_RS02080 (BUCHPPLA3609_414) dnaB 434475..435884 (+) 1410 WP_367677495.1 replicative DNA helicase -
  AB4W57_RS02085 (BUCHPPLA3609_415) ruvX 436420..436890 (+) 471 WP_367677496.1 Holliday junction resolvase RuvX -
  AB4W57_RS02090 (BUCHPPLA3609_416) hemW 437175..438311 (+) 1137 WP_367677726.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19344.84 Da        Isoelectric Point: 9.7050

>NTDB_id=1165423 AB4W57_RS02070 WP_367677493.1 432864..433370(-) (ssb) [Buchnera aphidicola (Chaitophorus populicola) strain Chpopulicola-3609]
MASRGINKVILIGYLGQDPDIRYMTNGSAVANINVATSENWKDKNTGEIREKTEWHKVVLFGKLAEITGEYLKKGSQVYI
EGSLQTRKWKDQNNLERYTTEIIVNINGSMQMLGNRQSKLEKDHSNNKKNLFNKNSLLKNNKNFKKKSDKNLLLDDESNT
DFEDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1165423 AB4W57_RS02070 WP_367677493.1 432864..433370(-) (ssb) [Buchnera aphidicola (Chaitophorus populicola) strain Chpopulicola-3609]
ATGGCAAGTCGTGGTATTAATAAAGTTATTTTAATAGGATATCTTGGACAAGATCCAGATATTCGATATATGACGAATGG
ATCAGCAGTAGCAAATATTAATGTAGCTACTTCAGAAAATTGGAAAGATAAAAATACAGGTGAAATTCGAGAAAAAACTG
AATGGCATAAAGTCGTTTTATTTGGAAAATTAGCTGAAATTACAGGAGAATATTTAAAAAAAGGATCTCAGGTATATATT
GAAGGATCTTTACAAACTAGAAAATGGAAAGATCAAAATAATTTAGAAAGATATACAACAGAGATTATTGTAAATATTAA
CGGATCTATGCAAATGCTTGGTAATAGGCAAAGTAAATTGGAAAAAGATCATTCAAATAATAAAAAAAATCTTTTTAATA
AAAATTCTTTATTGAAAAATAATAAAAATTTTAAAAAAAAATCTGATAAAAATTTATTATTAGATGATGAATCAAATACG
GATTTTGAAGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.554
  ssb Glaesserella parasuis strain SC1401

44.262

100

0.482
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.405

Multiple sequence alignment