Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W58_RS02030 Genome accession   NZ_OZ060379
Coordinates   430768..431274 (-) Length   168 a.a.
NCBI ID   WP_367674018.1    Uniprot ID   -
Organism   Buchnera aphidicola (Chaitophorus sp. 3695) strain Chaitophorus_sp-3695     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 425768..436274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W58_RS02010 (BUCHAPSP3695_402) - 426318..427919 (-) 1602 WP_367674014.1 peptide chain release factor 3 -
  AB4W58_RS02015 (BUCHAPSP3695_403) ansA 428121..429134 (+) 1014 WP_367674015.1 asparaginase -
  AB4W58_RS02020 (BUCHAPSP3695_404) - 429193..429768 (-) 576 WP_367674016.1 NifU family protein -
  AB4W58_RS02025 (BUCHAPSP3695_405) - 429917..430678 (+) 762 WP_367674017.1 alpha/beta fold hydrolase -
  AB4W58_RS02030 (BUCHAPSP3695_406) ssb 430768..431274 (-) 507 WP_367674018.1 single-stranded DNA-binding protein Machinery gene
  AB4W58_RS02035 (BUCHAPSP3695_407) dusA 431383..432363 (+) 981 WP_367674019.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AB4W58_RS02040 (BUCHAPSP3695_408) dnaB 432387..433796 (+) 1410 WP_367674020.1 replicative DNA helicase -
  AB4W58_RS02045 (BUCHAPSP3695_409) - 433931..434503 (+) 573 WP_367674021.1 YqgE/AlgH family protein -
  AB4W58_RS02050 (BUCHAPSP3695_410) ruvX 434507..434923 (+) 417 WP_367674022.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19323.86 Da        Isoelectric Point: 9.9881

>NTDB_id=1165412 AB4W58_RS02030 WP_367674018.1 430768..431274(-) (ssb) [Buchnera aphidicola (Chaitophorus sp. 3695) strain Chaitophorus_sp-3695]
MASRGINKVILIGYLGQNPDIRYMTNGSAVANINVATSENWKDKNTGEIREKTEWHKVVLFGKLAEITGEYLKKGSQVYI
EGSLQTRKWKDQNNLERYTTEIIVNINGSMQMLGSRQNKFSTDQLDNKKTFFKKNSLSKNNKHSKKKSNKNLLLEDESNI
DFEDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1165412 AB4W58_RS02030 WP_367674018.1 430768..431274(-) (ssb) [Buchnera aphidicola (Chaitophorus sp. 3695) strain Chaitophorus_sp-3695]
ATGGCAAGTCGTGGAATCAATAAAGTTATTTTAATAGGATATCTTGGACAAAATCCAGACATTCGATATATGACAAATGG
ATCAGCAGTAGCAAATATTAATGTAGCTACTTCAGAGAATTGGAAAGATAAAAATACAGGTGAAATTCGAGAGAAAACTG
AATGGCATAAAGTAGTTTTATTTGGAAAATTAGCTGAAATTACAGGAGAATATTTAAAAAAAGGATCACAAGTATATATT
GAAGGATCTTTACAAACTAGAAAATGGAAAGATCAAAATAATTTAGAAAGATATACAACAGAAATTATTGTAAATATTAA
TGGATCTATGCAAATGCTTGGTAGTAGACAAAATAAATTTAGTACAGATCAATTAGATAATAAAAAAACTTTTTTTAAGA
AAAATTCTTTATCAAAAAATAATAAGCATTCTAAAAAAAAATCTAATAAAAATTTATTATTAGAAGATGAATCAAATATA
GATTTTGAAGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.542
  ssb Glaesserella parasuis strain SC1401

42.541

100

0.458
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.393

Multiple sequence alignment