Detailed information NTG0116486

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: YC6258_RS24220
• Genome accession: NZ_CP007142
• Coordinates: 5838269..5839645 (+)
• Length: 458 a.a.
• NCBI ID: WP_044619164.1
• Uniprot ID: A0A0C5W469
• Organism: Gynuella sunshinyii YC6258
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5833269..5844645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YC6258_RS24205 (YC6258_05385)	-	5834088..5834852 (+)	765	WP_044619162.1	outer membrane protein assembly factor BamD	-
YC6258_RS24210 (YC6258_05386)	-	5834878..5836500 (-)	1623	WP_082070875.1	NAD+ synthase	-
YC6258_RS24215 (YC6258_05388)	-	5836648..5838264 (+)	1617	WP_044619163.1	ATP-binding protein	-
YC6258_RS24220 (YC6258_05389)	pilR	5838269..5839645 (+)	1377	WP_044619164.1	sigma-54 dependent transcriptional regulator	Regulator
YC6258_RS24225 (YC6258_05390)	-	5839766..5840320 (+)	555	WP_044619165.1	GspH/FimT family pseudopilin	-
YC6258_RS24230 (YC6258_05391)	-	5840411..5840890 (-)	480	WP_044619166.1	type IV pilin protein	-
YC6258_RS29985	-	5840893..5841099 (-)	207	WP_144407737.1	hypothetical protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50773.90 Da
• Isoelectric Point: 5.0180

>NTDB_id=116486 YC6258_RS24220 WP_044619164.1 5838269..5839645(+) (pilR) [Gynuella sunshinyii YC6258]
MDTLATALIIDDEPDIVELLEITLGRMGLGTIAATSLAQAQKLLAEKEIHICLTDMNLPDGNGLDLVETIQQKYSNIPVA
VISAHGTMDSAIDALKRGAFDFVSKPVDLQQLRDLVHSALKLANRIRKPENEINRQANLIGKSEPFIELLDNAEKLARSQ
AAVFINGESGTGKELIARYIHNQGPRAEQPFIAVNCGAIPSELMESEFFGHKKGSFTGAIADKEGFFQAANGGTLFLDEV
ADLPLNMQVKLLRAIQEKSIRPVGSQKELPVNVRILSASHKNLLDEVEDQNFRQDLFYRINVIQLDIPPLRERFEDIPLL
AHHYLEKLATSYGVRPRELTRSAQEALQVYDFPGNIRELENILERAFAMSDGAKIEPKDLALRRNDSSASLSSGSSLSAL
ETPEYEAGSNLEDYLESIERKVITDALEATRWNKTAAAKNLGITFRAMRYKLKKLGLE

Nucleotide

• Length: 1377 bp

>NTDB_id=116486 YC6258_RS24220 WP_044619164.1 5838269..5839645(+) (pilR) [Gynuella sunshinyii YC6258]
ATGGATACCTTGGCAACCGCATTAATCATAGACGACGAACCGGACATTGTTGAACTTCTGGAAATTACCCTTGGTCGTAT
GGGGCTAGGAACTATCGCTGCAACCAGTCTGGCACAAGCACAAAAATTGCTGGCAGAAAAAGAGATTCATATCTGTCTGA
CAGACATGAATCTGCCAGATGGAAATGGCCTGGACCTGGTGGAAACAATACAACAAAAATACAGTAATATTCCGGTTGCA
GTAATCTCCGCACATGGCACGATGGACTCTGCAATTGATGCACTAAAACGAGGAGCCTTTGACTTTGTCTCCAAACCTGT
AGATCTGCAACAACTCAGGGATCTGGTGCATTCTGCACTCAAACTGGCAAACCGGATCCGTAAACCAGAAAATGAAATAA
ATCGGCAAGCCAACCTAATCGGCAAATCTGAACCTTTTATAGAACTGCTGGACAATGCTGAAAAATTGGCCCGCAGTCAG
GCTGCTGTATTTATCAATGGTGAATCCGGTACCGGTAAAGAGCTCATCGCCCGCTATATTCACAATCAGGGCCCCAGGGC
TGAACAACCATTTATTGCAGTAAACTGTGGAGCAATACCATCAGAATTAATGGAAAGTGAGTTTTTTGGTCACAAAAAGG
GCAGCTTTACTGGAGCAATCGCAGACAAAGAAGGCTTTTTCCAGGCCGCAAATGGAGGAACTTTATTTCTTGATGAAGTT
GCTGATTTGCCATTGAATATGCAGGTAAAACTGCTACGCGCAATTCAGGAAAAATCCATCCGACCGGTGGGATCACAAAA
GGAACTGCCGGTTAACGTGAGAATACTCAGCGCCAGTCATAAAAACCTGCTGGATGAAGTGGAAGATCAGAACTTCCGTC
AGGATCTGTTTTATCGAATCAATGTTATCCAATTGGATATTCCACCGCTGCGGGAAAGATTTGAAGACATTCCTCTTTTG
GCCCATCACTATCTCGAAAAACTGGCCACATCATACGGCGTTCGCCCCAGAGAACTGACAAGAAGCGCCCAGGAAGCACT
TCAGGTATATGACTTTCCCGGTAATATTCGAGAGTTGGAAAATATTTTGGAGCGTGCTTTTGCAATGTCAGACGGCGCAA
AAATTGAGCCTAAAGATTTGGCCCTGCGGCGGAATGATTCTTCTGCCTCACTAAGCTCAGGCAGCAGTCTGAGTGCGCTG
GAGACGCCTGAATATGAAGCTGGAAGCAATCTTGAGGATTATCTGGAATCAATCGAAAGAAAGGTTATAACCGATGCATT
GGAGGCAACACGCTGGAATAAAACTGCGGCAGCCAAAAACCTGGGAATCACCTTCAGAGCCATGAGGTATAAGCTTAAAA
AACTGGGGCTCGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (415-455)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

3D structure

• AlphaFold DB: A0A0C5W469

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.589	98.908	0.609
pilR	Acinetobacter baumannii strain A118	51.188	100	0.517