Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RG41_RS24070 Genome accession   NZ_CP010151
Coordinates   4647906..4648538 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain D8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4642906..4653538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG41_RS24045 (RG41_22705) yhfG 4643038..4643205 (+) 168 WP_000736859.1 YhfG family protein -
  RG41_RS24050 (RG41_22710) fic 4643195..4643797 (+) 603 WP_001280662.1 putative adenosine monophosphate-protein transferase Fic -
  RG41_RS24055 (RG41_22715) pabA 4643829..4644392 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  RG41_RS24060 (RG41_22720) argD 4644478..4645698 (+) 1221 WP_000963803.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  RG41_RS24065 (RG41_22725) yhfK 4645765..4647855 (-) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  RG41_RS24070 (RG41_22730) crp 4647906..4648538 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  RG41_RS24080 (RG41_22740) yhfA 4648840..4649244 (+) 405 WP_001148908.1 OsmC family protein -
  RG41_RS24085 (RG41_22745) prkB 4649299..4650168 (-) 870 WP_001274680.1 phosphoribulokinase -
  RG41_RS24090 (RG41_22750) yheU 4650222..4650440 (-) 219 WP_000907089.1 YheU family protein -
  RG41_RS24095 (RG41_22755) yheT 4650434..4651456 (-) 1023 WP_000057389.1 hydrolase -
  RG41_RS24100 (RG41_22760) yheS 4651456..4653369 (-) 1914 WP_000634799.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=116376 RG41_RS24070 WP_000242755.1 4647906..4648538(-) (crp) [Escherichia coli strain D8]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=116376 RG41_RS24070 WP_000242755.1 4647906..4648538(-) (crp) [Escherichia coli strain D8]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467