Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   ABNR97_RS03265 Genome accession   NZ_OZ021676
Coordinates   636480..636953 (-) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631480..641953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS03240 yaaA 632425..633204 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  ABNR97_RS03245 dapC 633515..634702 (-) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  ABNR97_RS03250 dut 634780..635232 (-) 453 WP_103195211.1 dUTP diphosphatase -
  ABNR97_RS03255 - 635398..636105 (+) 708 Protein_641 AzlC family ABC transporter permease -
  ABNR97_RS03260 - 636102..636410 (+) 309 WP_010951048.1 AzlD family protein -
  ABNR97_RS03265 pilL 636480..636953 (-) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  ABNR97_RS03270 pilK 636955..637566 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABNR97_RS03275 pilJ 637545..638525 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  ABNR97_RS03280 pilV 638522..639133 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  ABNR97_RS03285 pilH 639165..639830 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABNR97_RS03290 dnaB 639985..641391 (-) 1407 WP_047917169.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=1162903 ABNR97_RS03265 WP_025455870.1 636480..636953(-) (pilL) [Neisseria gonorrhoeae isolate SGC-23-001]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1162903 ABNR97_RS03265 WP_025455870.1 636480..636953(-) (pilL) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment